Dbfetch
ID HLA01899; SV 2; standard; DNA; HUM; 3986 BP.
XX
AC HLA01899;
XX
SV HLA01899.2
XX
DT 30-APR-2004 (Rel. 2.6.0, Created, Version 1)
DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2)
XX
DE HLA-B*40:50:01:01, Human MHC Class I sequence
XX
KW Human MHC; HLA; Class I; HLA-B; Allele; HLA-B*40:50:01:01;
XX
OS Homo Sapiens (human)
OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC Catarrhini; Hominidae; Homo.
XX
CC --------------------------------------------------------------------------
CC IPD-IMGT/HLA Release Version 3.55.0
CC --------------------------------------------------------------------------
CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC Commons Attribution-NoDerivs License, see;
CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC --------------------------------------------------------------------------
XX
RN [1]
RP 1-3986
RX PUBMED; 30337930.
RA Suzuki S, Ranade S, Osaki K, Iyo S, Shigenari A, Ohnuki Y, Oka A, Masuya A,
RA Harting J, Baybayan P, Kitazume M, Sunaga J, Morishima S, Morishima Y,
RA Inoko H, Kulski JK, Shiina T;
RT "Reference grade characterization of polymorphisms in full-length HLA class
RT I and II genes with short-read sequencing on the ION PGM system and
RT long-reads generated by single molecule, real-time sequencing on the PacBio
RT platform.";
RL Frontiers in Immunology 9:2294(2018).
XX
CC --------------------------------------------------------------------------
CC The sequence below is the official allele sequence as approved by the
CC WHO Nomenclature Committee for Factors of the HLA System.
CC Any cross references may differ from the sequence shown below.
CC --------------------------------------------------------------------------
XX
DR EMBL; AB174888; AB174888.1.
DR EMBL; AB174889; AB174889.1.
DR EMBL; AB174890; AB174890.2.
DR EMBL; AH014636; AH014636.2.
DR EMBL; AY829221; AY829221.1.
DR EMBL; AY829222; AY829222.1.
DR EMBL; ERZ477899; ERZ477899.
DR EMBL; FJ594729; FJ594729.1.
DR EMBL; LC257729; LC257729.1.
XX
FH Key Location/Qualifiers
FH
FT source 1..3986
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT /ethnic="Asian, Undefined"
FT /cell_line="0992117901793L"
FT /cell_line="HN-1893046"
FT /cell_line="JM34"
FT /cell_line="TBC42321"
FT /cell_line="VTIS125430"
FT CDS join(285..357,487..756,1001..1276,1852..2127,2221..2337,
FT 2779..2811,2918..2961)
FT /codon_start=1
FT /gene="HLA-B"
FT /allele="HLA-B*40:50:01:01"
FT /product="MHC Class I HLA-B*40:50:01:01 sequence"
FT /translation="MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFHTSVSRPGRGEPR
FT FITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTDRESLRN
FT LRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK
FT GGSYSQAACSDSAQGSDVSLTA"
FT UTR 1..284
FT exon 285..357
FT /number="1"
FT intron 358..486
FT /number="1"
FT exon 487..756
FT /number="2"
FT intron 757..1000
FT /number="2"
FT exon 1001..1276
FT /number="3"
FT intron 1277..1851
FT /number="3"
FT exon 1852..2127
FT /number="4"
FT intron 2128..2220
FT /number="4"
FT exon 2221..2337
FT /number="5"
FT intron 2338..2778
FT /number="5"
FT exon 2779..2811
FT /number="6"
FT intron 2812..2917
FT /number="6"
FT exon 2918..2961
FT /number="7"
FT UTR 2962..3986
SQ Sequence 3986 BP; 746 A; 1133 C; 1211 G; 896 T; 0 other;
gatcaggacg aagtcccagg ccccgggcgg ggctctcagg gtctcaggct ccgagagcct 60
tgtctgcatt ggggaggcgc agcattgggg attccccact cccacgagtt tcacttcttc 120
tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc 180
ccattgggtg tcgggtgtct agagaagcca atcagtgtcg ccggggtccc agttctaaag 240
tccccacgca cccacccgga ctcagaatct cctcagacgc cgagatgcgg gtcacggcgc 300
cccgaaccct cctcctgctg ctctgggggg cagtggccct gaccgagacc tgggctggtg 360
agtgcggggt cggcagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg 420
gcgcaggacc cggggagccg cgccgggagg agggtcgggc gggtctcagc ccctcctcgc 480
ccccaggctc ccactccatg aggtatttcc acacctccgt gtcccggccc ggccgcgggg 540
agccccgctt catcaccgtg ggctacgtgg acgacacgct gttcgtgagg ttcgacagcg 600
acgccacgag tccgaggaag gagccgcggg cgccatggat agagcaggag gggccggagt 660
attgggaccg ggagacacag atctccaaga ccaacacaca gactgaccga gagagcctgc 720
ggaacctgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780
aggtcacgac tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag 840
atccgccccc gaggccgcgg gacccgccca gaccctcgac cggcgagagc cccaggcgcg 900
tttacccggt ttcattttca gttgaggcca aaatccccgc gggttggtcg gggcggggcg 960
gggctcgggg ggacggggct gaccgcgggg gcggggccag ggtctcacac cctccagagc 1020
atgtacggct gcgacgtggg gccggacggg cgcctcctcc gcgggcataa ccagtacgcc 1080
tacgacggca aggattacat cgccctgaac gaggacctgc gctcctggac cgccgcggac 1140
acggcggctc agatcaccca gcgcaagtgg gaggcggccc gtgtggcgga gcagctgaga 1200
gcctacctgg agggcgagtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag 1260
acgctgcagc gcgcgggtac caggggcagt ggggagcctt ccccatctcc tataggtcgc 1320
cggggatggc ctcccacgag aagaggagga aaatgggatc agcgctagaa tgtcgccctc 1380
ccttgaatgg agaatggcat gagttttcct gagtttcctc tgagggcccc ctcttctctc 1440
taggacaatt aagggatgac gtctctgagg aaatggaggg gaagacagtc cctagaatac 1500
tgatcagggg tcccctttga cccctgcagc agccttggga accgtgactt ttcctctcag 1560
gccttgttct ctgcctcaca ctcagtgtgt ttggggctct gattccagca cttctgagtc 1620
actttacctc cactcagatc aggagcagaa gtccctgttc cccgctcaga gactcgaact 1680
ttccaatgaa taggagatta tcccaggtgc ctgcgtccag gctggtgtct gggttctgtg 1740
ccccttcccc accccaggtg tcctgtccat tctcaggctg gtcacatggg tggtcctagg 1800
gtgtcccatg agagatgcaa agcgcctgaa ttttctgact cttcccatca gaccccccaa 1860
agacacacgt gacccaccac cccatctctg accatgaggc caccctgagg tgctgggccc 1920
tgggcttcta ccctgcggag atcacactga cctggcagcg ggatggcgag gaccaaactc 1980
aggacactga gcttgtggag accagaccag caggagatag aaccttccag aagtgggcag 2040
ctgtggtggt gccttctgga gaagagcaga gatacacatg ccatgtacag catgaggggc 2100
tgccgaagcc cctcaccctg agatggggta aggaggggga tgaggggtca tatctcttct 2160
cagggaaagc aggagccctt cagcagggtc agggcccctc atcttccctt cctttcccag 2220
agccgtcttc ccagtccacc gtccccatcg tgggcattgt tgctggcctg gctgtcctag 2280
cagttgtggt catcggagct gtggtcgctg ctgtgatgtg taggaggaag agctcaggta 2340
gggaaggggt gaggggtggg gtctgagttt tcttgtccca ctgggggttt caagccccag 2400
gtagaagtgt tccctgcctc attactggga agcagcatcc acacaggggc taacgcagcc 2460
tgggaccctg tgtgccagaa cttactcttt tgtgcagcac atgtgacaat gaaggacgga 2520
tgtatcacct tggtggttgt ggtgttgggg tcctgattcc agcattcatg agtcagggga 2580
aggtccctgc taaggacaga ccttaggagg gcagttggtc caggacccac acttgctttc 2640
ctcgtgtttc ctgatcctgc cttgggtctg tagtcatact tctggaaatt ccttttgggt 2700
ccaagacgag gaggttcctc taagatctca tggccctgct tcctcccagt cccctcacag 2760
ggcattttct tcccacaggt ggaaaaggag ggagctactc tcaggctgcg tgtaagtgat 2820
gggggtggga gtgtggagga gctcacccac cccctaattc ctcctgtccc acgtctcctg 2880
cgggctctga ccaggtcctg tttttgttct actccaggca gcgacagtgc ccagggctct 2940
gatgtgtctc tcacagcttg aaaaggtgag attcttgggg tctagagtgg gtggggtggc 3000
aggtctgggg gtgggtgggg cagtggggaa aggcctgggt aatggagatt ctttgattgg 3060
gatgtttcgc gtgtgtggtg ggctgtttag actgtcatca cttaccatga ctaaccagaa 3120
tttgttcatg actgttgttt tctgtagcct gagacagctg tcttgtgagg gactgagatg 3180
caggatttct tcacgcctcc cctttgtgac ttcaagagcc tctggcatct ctttctgcaa 3240
aggcacctga atgtgtctgc gtccctgtta gcataatgtg aggaggtgga gagaccagcc 3300
cacccccgtg tccactgtga cccctgttcc catgctgacc tgtgtttcct ccccagtcat 3360
ctttcctgtt ccagagaggt ggggctggat gtctccatct ctgtctcaac tttatgtgca 3420
ctgagctgca acttcttact tccctactga aaataagaat ctgaatataa atttgttttc 3480
tcaaatattt gctatgagag gttgatggat taattaaata agtcaattcc tggaatttga 3540
gagagcaaat aaagacctga gaaccttcca gaatctgcat gttcgctgtg ctgagtctgt 3600
tgcaggtggg gtgtggagaa ggctgtgggg ggccgagtgt ggacggggcc tgtgcccatt 3660
tggtgttgag tccatcatgg gctttatgtg gttagtcctc agctgggtca ccttcactgc 3720
tccattgtcc ttgtcccttc agtggaaact tgtccagtgg gagctgtgac cacagaggct 3780
cacacatcgc cctgggcggc ccctgcacac gggggtctct gtgcattctg agacaaattt 3840
tcagagccat tcacctcctg ccctgcttct agagctcctt ttctgctctg ctcttctgcc 3900
ctctctccct gccctggttc tagtgatctt ggtgctgaat ccaatcccaa ctcatgaatc 3960
tgtaaagcag agtctaattt agactt 3986
//