Dbfetch
ID HLA01855; SV 2; standard; DNA; HUM; 3359 BP. XX AC HLA01855; XX SV HLA01855.2 XX DT 31-JAN-2004 (Rel. 2.5.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2) XX DE HLA-C*03:03:04, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*03:03:04; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-3359 RX PUBMED; 15663747. RA Lebedeva TV, Ohashi M, Huang A, Vasconcellos S, Flesch S, Yu N; RT "Emerging new alleles suggest high diversity of HLA-C locus."; RL Tissue Antigens 65:101-106(2005). XX RN [2] RP 1-3359 RX PUBMED; 30117314. RA Lazaro A, Hou L, Tu B, Masaberg C, Enriquez E, Gerfen J, Kariyawasam K, RA Persaud M, Qin X, Simbulan D, Xiao Y, Xun L, Yang R, Ng J, Hurley CK; RT "Full gene HLA class I sequences of 79 novel and 519 mostly uncommon RT alleles from a large United States registry population."; RL HLA 92:304-309(2018). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; AJ616300; AJ616300.1. DR EMBL; AJ616301; AJ616301.1. DR EMBL; AJ616302; AJ616302.1. DR EMBL; AJ616303; AJ616303.1. DR EMBL; AJ620459; AJ620459.1. DR EMBL; AJ620460; AJ620460.1. DR EMBL; LT908379; LT908379.1. DR EMBL; MG747489; MG747489.1. DR EMBL; MG787285; MG787285.1. XX FH Key Location/Qualifiers FH FT source 1..3359 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="African descent, Undefined" FT /cell_line="149740" FT /cell_line="220952" FT /cell_line="226727" FT /cell_line="AN00678" FT /cell_line="NT01911" FT /cell_line="NT01993" FT CDS join(295..367,498..767,1013..1288,1876..2151,2273..2392, FT 2832..2864,2972..3019,3184..3188) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*03:03:04" FT /product="MHC Class I HLA-C*03:03:04 sequence" FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFYTAVSRPGRGEPH FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN FT LRGYYNQSEARSHIIQRMYGCDVGPDGRLLRGYDQYAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLKNGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT UTR 1..294 FT exon 295..367 FT /number="1" FT intron 368..497 FT /number="1" FT exon 498..767 FT /number="2" FT intron 768..1012 FT /number="2" FT exon 1013..1288 FT /number="3" FT intron 1289..1875 FT /number="3" FT exon 1876..2151 FT /number="4" FT intron 2152..2272 FT /number="4" FT exon 2273..2392 FT /number="5" FT intron 2393..2831 FT /number="5" FT exon 2832..2864 FT /number="6" FT intron 2865..2971 FT /number="6" FT exon 2972..3019 FT /number="7" FT intron 3020..3183 FT /number="7" FT exon 3184..3188 FT /number="8" FT UTR 3189..3359 SQ Sequence 3359 BP; 629 A; 974 C; 1054 G; 702 T; 0 other; aggagaagag gaatcaggac gaagtcccag gtcccgggcg gggctctcag ggtctcaggc 60 tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt 120 ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc 180 aattcccact cccattgggt gtcggattct agagaagcca atcagcgtct ccgcagtccc 240 ggttctgaag tccccagtca cccacccgga ctcagattct ccccagacgc cgagatgcgg 300 gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc 360 tgggccggtg agtgcggggt tgggagggaa tcggcctctg cggagaggag cgaggggccc 420 gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag 480 cccctcctcg cccccaggct cccactccat gaggtatttc tacaccgctg tgtcccggcc 540 cggccgcggg gagccccact tcatcgcagt gggctacgtg gacgacacgc agttcgtgcg 600 gttcgacagc gacgccgcga gtccgagagg ggagccgcgg gcgccgtggg tggagcagga 660 ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg 720 agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccagtg agtgaccccg 780 gcccggggcg caggtcacga cccctcctca tcccccacgg acggcccggg tcgccccaag 840 tctcccggtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag 900 agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg 960 tcggggcggg gcggggctcg ggggacgggg ctgaccgcgg gggcggggcc agggtctcac 1020 atcatccaga ggatgtacgg ctgcgacgtg gggcccgacg ggcgcctcct ccgcgggtat 1080 gaccagtacg cctacgacgg caaggattac atcgccctga acgaggatct gcgctcctgg 1140 accgccgcgg acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgaggcg 1200 gagcagctga gagcctacct ggagggcctg tgcgtggagt ggctccgcag atacctgaag 1260 aatgggaagg agacgctgca gcgcgcgggt accaggggca gtggggagcc ttccccatct 1320 cctgtagatc tcccgggatg gcctcccacg aggaggggag gaaaatggga tcagcgctag 1380 aatatcgccc tcccttgaat ggagaatggg atgagttttc ctgagtttcc tctgagggcc 1440 ccctctgctc tctaggacaa ttaagggatg aagtccttga ggaaatggag gggaagacag 1500 tccctagaat actgatcagg ggtccccttt gaccactttg accactgcag cagctgtggt 1560 caggctgctg acctttctct caggccttgt tctctgcctc acgctcaatg tgtttgaagg 1620 tttgattcca gcttttctga gtccttcggc ctccactcag gtcaggacca gaagtcgctg 1680 ttcctccctc agagactaga actttccaat gaataggaga ttatcccagg tgcctgtgtc 1740 caggctggcg tctgggttct gtgccccctt ccccacccca ggtgtcctgt ccgttctcag 1800 gatggtcaca tgggcgctgt tggagtgtcg caagagagat acaaagtgtc tgaattttct 1860 gactcttccc gtcagaacac ccaaagacac acgtgaccca ccatcccgtc tctgaccatg 1920 aggccaccct gaggtgctgg gccctgggct tctaccctgc ggagatcaca ctgacctggc 1980 agtgggatgg ggaggaccaa actcaggaca ctgagcttgt ggagaccagg ccagcaggag 2040 atggaacctt ccagaagtgg gcagctgtgg tggtgccttc tggagaagag cagagataca 2100 cgtgccatgt gcagcacgag gggctgccgg agcccctcac cctgagatgg ggtaaggagg 2160 gggatgaggg gtgatgtgtc ttctcaggga aagcagaagt cctggagccc ttcagccagg 2220 tcagggctga ggcttggggg tcagggcccc tcaccttccc ctcctttccc agagccgtct 2280 tcccagccca ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta 2340 gctgtcctag gagctgtggt ggctgttgtg atgtgtagga ggaagagctc aggtagggaa 2400 ggggtgagga gtggggtctg ggttttcttg ttccactggg agtttcaagc cccaggtaga 2460 agtgtgcccc acctcgttac tggaagcacc atccacacat gggccatccc agcctgggac 2520 cctgtgtgcc agcacttact ctgttgtgaa gcacatgaca atgaaggaca gatgtatcac 2580 cttgatgatt atggtgttgg ggtccttgat tccagcattc atgagtcagg ggaaggtccc 2640 tgctaaggac agaccttagg agggcagttg ctccagaacc cacagctgct ttccccgtgt 2700 ttcctgatcc tgccctgggt ctgcagtcat agttctggaa acttctcttg ggtccaagac 2760 taggaggttc ccctaagatc gcatggccct gactcctccc tgtcccctca cagggcattt 2820 tcttcccaca ggtggaaaag gagggagctg ctctcaggct gcgtgtaagt gatggcggtg 2880 ggcgtgtgga ggagctcacc caccccataa ttcctcttgt cccacatctc ctgcgggctc 2940 tgaccaggtc tttttttttg ttctacccca gccagcaaca gtgcccaggg ctctgatgag 3000 tctctcatcg cttgtaaagg tgagattctg gggagctgaa gtggtcgggg gtggggcaga 3060 gggaaaaggc ctaggtaatg gggatccttt gattgggacg tttcgaatgt gtggtgagct 3120 gttcagagtg tgatcactta ccatgactga cctgaatttg ttcatgacta ttgtgttctg 3180 tagcctgaga cagctgcctg tgtgggactg agatgcagga tttcttcaca cctctccttt 3240 gtgacttcaa gagcctctgg catctctttc tgcaaaggca tctgaatgtg tctgcgttcc 3300 tgttagcata atgtgaggag gtggacagac agcccacccc cgtgtccacc gtgacccct 3359 //