Dbfetch
ID HLA00620; SV 1; standard; DNA; HUM; 5878 BP. XX AC HLA00620; XX SV HLA00620.1 XX DT 01-AUG-1989 (Rel. 1.0.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1) XX DE HLA-DQA1*06:01:01:01, Human MHC Class II sequence XX KW Human MHC; HLA; Class II; HLA-DQA1; Allele; HLA-DQA1*06:01:01:01; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-5878 RX PUBMED; 24355008. RA Witter K, Halliwell JA, Mautner J, Jolesch A, von Welser G, Rampp I, RA Spannagl M, Kauke T, Dick A; RT "Group-specific amplification of HLA-DQA1 revealed a number of genomic full RT length sequences including the novel HLA alleles DQA1*01:10 and RT DQA1*01:11."; RL Tissue Antigens 83:49-51(2014). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; HE965628; HE965628.1. XX FH Key Location/Qualifiers FH FT source 1..5878 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Undefined" FT /cell_line="202439" FT CDS join(153..234,4092..4337,4750..5031,5395..5549) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*06:01:01:01" FT /product="MHC Class II HLA-DQA1*06:01:01:01 sequence" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQFTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVTKHNLNILIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL" FT UTR 1..152 FT exon 153..234 FT /number="1" FT intron 235..4091 FT /number="1" FT exon 4092..4337 FT /number="2" FT intron 4338..4749 FT /number="2" FT exon 4750..5031 FT /number="3" FT intron 5032..5394 FT /number="3" FT exon 5395..5549 FT /number="4" FT UTR 5550..5878 SQ Sequence 5878 BP; 1718 A; 1241 C; 1307 G; 1612 T; 0 other; aactgaggtg tcatcatagg ggagttttct aattagccaa aacctgacct ggcagggttt 60 ggtttgggtg tcttcagatt tgcttgtctc gaggtcctca caattgctct acagctcaga 120 gcagcaactg ctgaggctgc cttgggaaga ggatgatcct aaacaaagct ctgctgctgg 180 gggcccttgc cctgaccacc gtgatgagcc cctgtggagg tgaagacatt gtgggtgagt 240 gcatgagtga gggatgttct ctggagctgg aagagaggaa atcgaagaaa agagagaaag 300 cgattttgca gagaaattgt agagatttcc taagggcccc ttcagtatta agagatttaa 360 aaattacggc tgtttctcct tcaggaaacc agagtcccaa cctactcttt ttgttatcta 420 tgctgttggc gttcactaag gatgctattc tgtttatatt gtattcagtc actacagcct 480 ggaggtctct atgtcattcc atcatgactg cctcaaaaat tggtgaggtt tccatcagtc 540 gataattttt tattattaaa aatttgtgaa gtatcattct caaatttccc tgaacaactt 600 ttgaagcttt tcggatgtct cctgtagtag accttggggt aaatgattcc atcaattata 660 tactctatag atattaagaa agatgccctt ttctttctct cagacttact tacatttcca 720 catgggaact ggcacaggtg gggagtgggt aaaggagtcc agcaggctga atgccttcaa 780 caatcatttt accacatggt cctcacttac tctcagctgc ctcatttgtg tcacctcaca 840 aataatcaaa taaaatgggc atgtagttaa gctttgtaaa tagtgaaaac atgaatgtca 900 attttatttt tacatatttc cattatagga gtagcttcac atttcttttc tttagcaaaa 960 taaggaatcc ttttatttta aaattgagaa tttatagtag aaaaacttgc taaattaaat 1020 cattttgttc tcaaattatc aacccaaatt acctgttgtt cacctcatct aatgaagtcc 1080 tataaaaaga aaagtgggtt agacatggtg gctcatgcct gtaatcccag cactttggga 1140 ggctgaggca ggaggatcct ttgagcccag gagttcgaga ccagcctggg caacatagca 1200 agacctcatc tctacaaaaa ataaaaatta gccaggtgtg gtggtgcgtg cctgggtgcc 1260 agctactcag aaggctgcaa tgggaggact gcttgagtcc aggaggcgga agctgcagtg 1320 agccatgatg gcaccactac actccagcca gggcaacaga gagagaccct gtcccaaaaa 1380 gaaagaggaa agaaagagag aaaggaagga aagaaagaaa gaaggaagta aggaaggaaa 1440 gaaggaagga agggagaagg ggaagggaag ggaaggaagg aaggaaagga aagggaaggg 1500 aggaaagaag gaaggaaaaa agaaaaagaa agaaagtaga aaggaagaaa gaagaaagaa 1560 agaagaaaga aaggaaagaa aagagggaag gaaagaaaga agaaggaagg aagcacagat 1620 taattattaa ttatttggtc tctcttagtc tcctctgtct ttgttgtcca tctcttccta 1680 cccctcttca tgcattcctt tctccctctt ccctttcagg atccatctct gactccctgc 1740 ttctttatat ggacagtggg tttgtaaaac aaaagttgaa aaatcagata gttaaaaggt 1800 gaagtgaact ggaaggtcta aacttccaca accttattaa ccatggctgc tcccattctg 1860 attttgttcg gcagtggaag ttccacctgc ttctccagag cacttggctt ctttgttcca 1920 aatttccttt cttccacctc acaccagagt gccctggtca ggctcggctc atccattagg 1980 cacaacgtgg gcaatgcaga gaaccctcca tactgtaaag ccacatgaga atgttttaac 2040 tccttttaag attagaaaaa aatgaaattt cagagcccaa gaaaatgttt taattcagcc 2100 tagattgtat tgtctttata ccaattcagt cataaaatac aattttccat atttttatgg 2160 aggaaggggc ccacaaaagc aagagtgctt agggctcaca tgtcagaacg cagccctggt 2220 catggctgat cctggccttc gtatgattct gctagtgtgc ctgtccgtct tccccagaat 2280 ctatgtagtc ctcaaatata gcaactgtaa ttcaaaacac gtttgagcac acagtaagct 2340 aagttttaag gattcaaaga cgaaaagtca tgctgtcttc cctgcagagg gtgctcagac 2400 tagtgatgga aacagtatgg gatgcaggaa agcagaaggc tattgctgag cagggcagtg 2460 gactcagcag aggctgaaac tatacaaatg acttggttcc agctgggcca gcagggtgac 2520 atcctccagc aaaactcggc acccaagaca agtcccagat gaaaagaagg attgctttgt 2580 gtttgataag gagtcaaggt ttattgcaag gataagaagg ctttgttggt ggcctgttaa 2640 gaccatccag ggcagtcata ctggataagg aggaaggtga gctggaagag gaacagacaa 2700 acagccagat attgagatgg aagaggtgga ggtcataacg tggtaaaaaa tatgttgatg 2760 agaggactta gctacaaagt tgttaactta agcataaacc gcaaggatga attttaggat 2820 ttctccagga agtcctaaaa gataatttca tttcagggag aaaaacaaca aaccactgca 2880 aagaccaggc aacacgaaag gataatgtag ttttgtttgc ttggcagata cttatgaaag 2940 atgttggact gtaaggctgt tgatagcctc ctcacagaac gtgctacagt acattgtatc 3000 tactccctta cctacctgac tcttccactg ttcagtttgt ttcttaatgg tagaccatgc 3060 ctgattggtg ttttacacac cccctgctat gtctgacact tgtgaatgct cagaaagtgg 3120 ggaaggaagg aaagatacaa cagtaaaagg cttacacgtc ttgacaagaa tgtccagttc 3180 ggctcatttg gctggagcca tatcgcatgg ctgccattct gctctggcat cctcagacaa 3240 gcacactgcc cattagagga aaaagggttt aatttagctg agtcctcaag tgaatataag 3300 tgttaagtca gaacactgta gacatttagt aacctccttc agaggaaaaa aaaaaaaggt 3360 ggggggaaat gacagaaatc caaaaactag tagagcttcc actcttcatt tcagaagaaa 3420 tcagttgctc tcctctaagg atcattacta ttaacaaaac agagaccttg aaggaggcat 3480 tgtttattta ttatatattt tgtaatgtta ttaccattct tgttatactc tttcttatac 3540 cctacaattg ttagcaaaca ttattttaaa ttaataagat cctgcatgct tttccttttt 3600 ttaaaaaaag aaagacctct gtgtagagtg tcctgttctg agccagtcct gagaggaaag 3660 aaagtacaat cagtttatta ttaactgatg aaagaattaa gtgaaagatg aatcttagga 3720 agcagaggga agtaaaccta gtctctgact aagaaagcta aataccataa taactcattc 3780 attccttctt ttgttcaatt acagtattta atcgtaagtc catgatgtgc caggcactca 3840 ggaaatagta aaaactggac atgcgatatt ctgcccttgt gtagcacaca ttatagtggg 3900 aaagaaagcg caattttaac cggacaacta ccaacactaa gagcggagga agcaggggct 3960 ggaaatgtcc acaggctgtg ccaaagatga agcccgtaat atttgaaagt cagtttcttc 4020 catcattttg tgtattaagg ttctttcttc ccctgttctc caccttcctg cttgtcatct 4080 tcactcatca gctgaccatg ttgcctctta tggtgtaaac ttgtaccagt cttacggtcc 4140 ctctggccag ttcacccatg aatttgatgg agacgagcag ttctacgtgg acctggggag 4200 gaaggagact gtctggtgtt tgcctgttct cagacaattt agatttgacc cgcaatttgc 4260 actgacaaac atcgctgtga caaaacacaa cttgaacatc ctgattaaac gctccaactc 4320 taccgctgct accaatggta tgtgtccaca attctgcccc tctttactga tctatccctt 4380 cataccaagt ttcattattt tacttccaag aggtccccag atcttctcat ggcaattgct 4440 gaaattctat cacttcccgt ctctaaaatc acatattccc atgtaataca agggtctttc 4500 cattatccat tcattaaatc cttctaggag aggtctcatc aacctcctac tttattaaac 4560 atgcccacag agagaagggc ataggaataa agcagaggca atgtgtcgtt gctcccaagc 4620 agaaggtaaa taagacctct ttgactatca ggtggtgaaa tgctggtagg agggctcttc 4680 caggatgtaa tgcagaagct catggcagag ctattcacac ttcacatcag tgctgtttcc 4740 tcaccacaga ggttcctgag gtcacagtgt tttccaagtc tcccgtgacg ctgggtcagc 4800 ccaacaccct catctgtctt gtggacaaca tctttcctcc tgtggtcaac atcacatggc 4860 tgagcaatgg gcactcagtc acagaaggtg tttctgagac cagcttcctc tccaagagtg 4920 atcattcctt cttcaagatc agttacctca ccttcctccc ttctgctgat gagatttatg 4980 actgcaaggt ggagcactgg ggcctggacg agcctcttct gaaacactgg ggtaaggatg 5040 agttccacca ctttttgatg ctttcttgtc tgtcaagttc agaacttcct gccttttact 5100 cctatatccc aaaacttgtt ttccacactt catgggtttc tttctttctt ttgaaagaat 5160 aaagcaacaa aagcaaagat ttattgaaaa tgaaagtaca cttcacaggg tgggaacggg 5220 cctgagcata ggggctcaag agccacttca tgggtttcta atgatagact tcactctcct 5280 ccctaagctg aggaccttga gtctttgcag agccaaccct ccaccccatc ccatcccaca 5340 cacatgcaca tgagcacact ctgctttctg acctcaacga cttcatatcc acagagcctg 5400 agattccagc ccctatgtca gagctcacag agactgtggt ctgcgccctg ggattgtctg 5460 tgggcctcgt gggcattgtg gtgggcactg tcttcatcat ccgaggcctg cgttcagttg 5520 gtgcttccag acaccaaggg cccttgtgaa tcccatcctg gaagggaagg taagattgag 5580 atttgttaga gctgaatccg cagtatgaga ggaaggaaag tggaggaggc tgtggacaag 5640 aatggttgaa agttgtaggg gaattgggaa gtggcatgat gatgacatag gagcggccta 5700 ggacccatcc atctcatgtc tgtcctgttg caggtgcatc gccatctaca ggagcagaag 5760 agtggacttg ctacatgacc tagcattatt ttctggcccc atttatcata tcccttttct 5820 cctccaaatg tttctcctct cacctcttct gtgggactta aattgctata tctgctca 5878 //