Dbfetch
ID HLA00274; SV 1; standard; DNA; HUM; 3843 BP.
XX
AC HLA00274;
XX
SV HLA00274.1
XX
DT 15-MAY-1992 (Rel. 1.0.0, Created, Version 1)
DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1)
XX
DE HLA-B*39:02:01:01, Human MHC Class I sequence
XX
KW Human MHC; HLA; Class I; HLA-B; Allele; HLA-B*39:02:01:01;
XX
OS Homo Sapiens (human)
OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC Catarrhini; Hominidae; Homo.
XX
CC --------------------------------------------------------------------------
CC IPD-IMGT/HLA Release Version 3.55.0
CC --------------------------------------------------------------------------
CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC Commons Attribution-NoDerivs License, see;
CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC --------------------------------------------------------------------------
XX
RN [1]
RP 1-3843
RX PUBMED; 8420828.
RA Kato N, Karaki S, Kashiwase K, Muller C, Akaza T, Juji T, Kano K, Takiguchi
RA M;
RT "Molecular analysis of HLA-B39 subtypes.";
RL Immunogenetics 37:212-216(1993).
XX
RN [2]
RP 1-3843
RX PUBMED; 30117314.
RA Lazaro A, Hou L, Tu B, Masaberg C, Enriquez E, Gerfen J, Kariyawasam K,
RA Persaud M, Qin X, Simbulan D, Xiao Y, Xun L, Yang R, Ng J, Hurley CK;
RT "Full gene HLA class I sequences of 79 novel and 519 mostly uncommon
RT alleles from a large United States registry population.";
RL HLA 92:304-309(2018).
XX
CC --------------------------------------------------------------------------
CC The sequence below is the official allele sequence as approved by the
CC WHO Nomenclature Committee for Factors of the HLA System.
CC Any cross references may differ from the sequence shown below.
CC --------------------------------------------------------------------------
XX
DR EMBL; M94053; M94053.1.
DR EMBL; MG553977; MG553977.1.
DR EMBL; MN816875; MN816875.1.
XX
FH Key Location/Qualifiers
FH
FT source 1..3843
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT /ethnic="Asian, Undefined"
FT /cell_line="BY02079"
FT /cell_line="NT01800"
FT /cell_line="YAM"
FT CDS join(285..357,486..755,1002..1277,1850..2125,2219..2335,
FT 2777..2809,2916..2959)
FT /codon_start=1
FT /gene="HLA-B"
FT /allele="HLA-B*39:02:01:01"
FT /product="MHC Class I HLA-B*39:02:01:01 sequence"
FT /translation="MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPR
FT FISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRETQISKTNTQTDRESLRN
FT LRGYYNQSEAGSHTLQRMYGCDVGPDGRLLRGHNQFAYDGKDYIALNEDLSSWTAADTA
FT AQITQRKWEAARVAEQLRTYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK
FT GGSYSQAASSDSAQGSDVSLTA"
FT UTR 1..284
FT exon 285..357
FT /number="1"
FT intron 358..485
FT /number="1"
FT exon 486..755
FT /number="2"
FT intron 756..1001
FT /number="2"
FT exon 1002..1277
FT /number="3"
FT intron 1278..1849
FT /number="3"
FT exon 1850..2125
FT /number="4"
FT intron 2126..2218
FT /number="4"
FT exon 2219..2335
FT /number="5"
FT intron 2336..2776
FT /number="5"
FT exon 2777..2809
FT /number="6"
FT intron 2810..2915
FT /number="6"
FT exon 2916..2959
FT /number="7"
FT UTR 2960..3843
SQ Sequence 3843 BP; 733 A; 1088 C; 1173 G; 849 T; 0 other;
gatcaggacg aagtcccagg tcccggacgg ggctctcagg gtctcaggct ccgagggccg 60
cgtctgcaat ggggaggcgc agcgttgggg attccccact cccctgagtt tcacttcttc 120
tcccaacttg tgtcgggtcc ttcttccagg atactcgtga cgcatcccca cttcccactc 180
ccattgggtg tcggatatct agagaagcca atcagcgtcg ccggggtccc agttctaaag 240
tccccacgca cccacccgga ctcagagtct cctcagacgc cgagatgctg gtcatggcgc 300
cccgaaccgt cctcctgctg ctctcggcgg ccctggccct gaccgagacc tgggccggtg 360
agtgcgggtc gggagggaaa tggcctctgc cgggaggagc gaggggaccg caggcggggg 420
cgcaggacct gaggagccgc gccgggagga gggtcgggcg ggtctcagcc cctcctcgcc 480
cccaggctcc cactccatga ggtatttcta cacctccgtg tcccggcccg gccgcgggga 540
gccccgcttc atctcagtgg gctacgtgga cgacacgcag ttcgtgaggt tcgacagcga 600
cgccgcgagt ccgagagagg agccgcgggc gccgtggata gagcaggagg ggccggaata 660
ttgggaccgg gagacacaga tctccaagac caacacacag actgaccgag agagcctgcg 720
gaacctgcgc ggctactaca accagagcga ggccggtgag tgaccccggc ccggggcgca 780
ggtcacgact ccccatcccc cacgtacggc ccgggtcgcc ccgagtctcc gggtccgaga 840
tccgcctccc tgaggccgcg ggacccgccc agaccctcga ccggcgagag ccccaggcgc 900
gtttacccgg tttcattttc agttgaggcc aaaatccccg cgggttggtc ggggcggggc 960
ggggctcggg gggacggggc tgaccgcggg gccggggcca gggtctcaca ccctccagag 1020
gatgtacggc tgcgacgtgg ggccggacgg gcgcctcctc cgcgggcata accagttcgc 1080
ctacgacggc aaggattaca tcgccctgaa cgaggacctg agctcctgga ccgcggcgga 1140
caccgcggct cagatcaccc agcgcaagtg ggaggcggcc cgtgtggcgg agcagctgag 1200
aacctacctg gagggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1260
gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctataggtcg 1320
ccggggatgg cctccaacga gaagaagagg aaaatgggat cagcgctaga atgtcgccct 1380
cccttgaatg gagaatggca tgagttttcc tgagtttcct ctgagggccc cctcttctct 1440
ctaggacaat taagggatga cgtctctgag gaaatggagg ggaagacagt ccctagaata 1500
ctgatcaggg gtcccctttg acccctgcag cagccttggg aaccatgact tttcctctca 1560
ggccttgttc tctgcctcac actcagtgtg tttggggctc tgattccagc acttctgagt 1620
cactttacct ccactcagat caggagcaga agtctctgtt ccccgctcag agactcgaac 1680
tttccaatga atagattatc ccaggtgcct gcgtccaggc tggtgtctgg gttctgtgcc 1740
ccttccccac cccaggtgtc ctgtccattc tcaggctggt cacatgggtg gtcctagggt 1800
gtcccatgag agatgcaaag cgcctgaatt ttctgactct tcccatcaga ccccccaaag 1860
acacatgtga cccaccaccc catctctgac catgaggcca ccctgaggtg ctgggccctg 1920
ggcttctacc ctgcggagat cacactgacc tggcagcggg atggcgagga ccaaactcag 1980
gacaccgagc ttgtggagac cagaccagca ggagacagaa ccttccagaa gtgggcagct 2040
gtggtggtgc cttctggaga agagcagaga tacacatgcc atgtacagca tgaggggctg 2100
ccgaagcccc tcaccctgag atggggtaag gagggggatg aggggtcata tctcttctca 2160
gggaaagcag gagcccttca gcagggtcag ggcccctcat cttcccctcc tttcccagag 2220
ccatcttccc agtccaccgt ccccatcgtg ggcattgttg ctggcctggc tgtcctagca 2280
gttgtggtca tcggagctgt ggtcgctgct gtgatgtgta ggaggaagag ctcaggtagg 2340
gaaggggtga ggggtggggt ctgggttttc ttgtcccact gggggtttca agccccaggt 2400
agaagtgttc cctgcatcat tactgggaag cagcatgcac acaggggcta acgcagcctg 2460
ggaccctgtg tgccagcact tactcttttg tgcagcacat gtgacaatga aggacggatg 2520
tatcaccttg atggttgtgg tgttggggtc ctgattccag cattcatgag tcaggggaag 2580
gtccctgcta aggacagacc ttaggagggc agttggtcca ggacccacac ttgctttcct 2640
cgtgtttcct gatcctgccc tgggtctgta gtcatacttc tggaaattcc ttttgggtcc 2700
aagactagga ggttcctcta agatctcatg gccctgcttc ctcccagtcc cctcacagga 2760
cattttcttc ccacaggtgg aaaaggaggg agctactctc aggctgcgtg taagtggtgg 2820
gggtgggagt gtggaggagc tcacccaccc cataattcct cctgtcccac gtctcctgtg 2880
ggctctgacc aggtcctgtt tttgttctac tccagccagc gacagtgccc agggctctga 2940
tgtgtctctc acagcttgaa aaggtgagat tcttggggtc tagagtgggc gggggggcgg 3000
ggagggggca gaggggaaag gcctgggtaa tggagattct ttgattggga tgtttcgcgt 3060
gtgtgatggg ctgttcagag tgtcatcact taccatgact aaccagaatt tgttcatgac 3120
tgttgttttc tgtagcctga gacagctgtc ttgtgaggga ctgagatgca ggatttcttc 3180
acgcctcccc tttgtgactt caagagcctc tggcatctct ttctgcaaag gcacctgaat 3240
gtgtctgcgt ccctgttagc ataatgtgag gaggtggaga gacagcccac ccttgtgtcc 3300
actgtgaccc ctgttcccat gctgacctgt gtttcctccc cagtcatctt tcttgttcca 3360
gagaggtggg gctggatgtc tccatctctg tctcaacttt atgtgcactg agctgcaact 3420
tcttacttcc ctactgaaaa taagaatctg aatataaatt tgttttctca aatatttgct 3480
atgagaggtt gatggattaa ttaaataagt caattcctgg aatttgagag agcaaataaa 3540
gacctgagaa ccttccagaa tctgcatgtt cgctgtgctg agtctgttgc aggtggggtg 3600
tggagaaggc tgtggggggc caagtgtgga cggggcctgt gcccatttgg tgttgagtcc 3660
atcatgggct ttatgtggtt agtcctcagt tgggtcacct tcactgctcc attgtccttg 3720
tcccttcagt ggaaacttgt ccagtgggag ctgtgaccac agaggctcac acatcgccca 3780
gggcggcccc tgcacacggg ggtctctgtg cattctgaga caaattttca gagccattca 3840
cct 3843
//