Dbfetch

ID   HLA00230; SV 1; standard; DNA; HUM; 3325 BP.
XX
AC   HLA00230;
XX
SV   HLA00230.1
XX
DT   02-OCT-1994 (Rel. 1.0.0, Created, Version 1)
DT   16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1)
XX
DE   HLA-B*27:09, Human MHC Class I sequence
XX
KW   Human MHC; HLA; Class I; HLA-B; Allele; HLA-B*27:09;
XX
OS   Homo Sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC   Catarrhini; Hominidae; Homo.
XX
CC   --------------------------------------------------------------------------
CC   IPD-IMGT/HLA Release Version 3.55.0
CC   --------------------------------------------------------------------------
CC   Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC   Commons Attribution-NoDerivs License, see;
CC   http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC   --------------------------------------------------------------------------
XX
RN   [1]
RP   1-3325
RX   PUBMED; 8089488.
RA   Del Porto P, D'Amato M, Fiorillo MT, Tuosto L, Piccolella E, Sorrentino R;
RT   "Identification of a novel HLA-B27 subtype by restriction analysis of a
RT   cytotoxic gamma delta T cell clone.";
RL   Journal of Immunology 153:3093-3100(1994).
XX
RN   [2]
RP   1-3325
RX   PUBMED; 30107213.
RA   Voorter CEM, Matern B, Tran TH, Fink A, Vidan-Jeras B, Montanic S, Fischer
RA   G, Fae I, de Santis D, Whidborne R, Andreani M, Testi M, Groeneweg M,
RA   Tilanus MGJ;
RT   "Full-length extension of HLA allele sequences by HLA allele-specific
RT   hemizygous Sanger sequencing (SSBT).";
RL   Human Immunology 79:763-772(2018).
XX
CC   --------------------------------------------------------------------------
CC   The sequence below is the official allele sequence as approved by the
CC   WHO Nomenclature Committee for Factors of the HLA System.
CC   Any cross references may differ from the sequence shown below.
CC   --------------------------------------------------------------------------
XX
DR   EMBL; EU375810; EU375810.1.
DR   EMBL; LT795519; LT795519.1.
DR   EMBL; LT934434; LT934434.1.
DR   EMBL; MZ458520; MZ458520.
DR   EMBL; MZ458521; MZ458521.
DR   EMBL; Z33453; Z33453.1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3325
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT                   /ethnic="European"
FT                   /cell_line="48063_SJ802/28"
FT                   /cell_line="B27-ci"
FT                   /cell_line="FH05"
FT                   /cell_line="MDA0000283"
FT                   /cell_line="MDA0000284"
FT                   /cell_line="NT00775"
FT   CDS             join(285..357,487..756,1001..1276,1852..2127,2221..2337,
FT                   2779..2811,2918..2961)
FT                   /codon_start=1
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*27:09"
FT                   /product="MHC Class I HLA-B*27:09 sequence"
FT                   /translation="MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFHTSVSRPGRGEPR
FT                   FITVGYVDDTLFVRFDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRT
FT                   LLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYIALNEDLSSWTAADTA
FT                   AQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE
FT                   ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK
FT                   GGSYSQAACSDSAQGSDVSLTA"
FT   UTR             1..284
FT   exon            285..357
FT                   /number="1"
FT   intron          358..486
FT                   /number="1"
FT   exon            487..756
FT                   /number="2"
FT   intron          757..1000
FT                   /number="2"
FT   exon            1001..1276
FT                   /number="3"
FT   intron          1277..1851
FT                   /number="3"
FT   exon            1852..2127
FT                   /number="4"
FT   intron          2128..2220
FT                   /number="4"
FT   exon            2221..2337
FT                   /number="5"
FT   intron          2338..2778
FT                   /number="5"
FT   exon            2779..2811
FT                   /number="6"
FT   intron          2812..2917
FT                   /number="6"
FT   exon            2918..2961
FT                   /number="7"
FT   UTR             2962..3325
SQ   Sequence 3325 BP; 608 A; 968 C; 1055 G; 694 T; 0 other;
     gatcaggacg aagtcccagg ccccgggcgg ggctctcagg gtctcaggct ccgagagcct        60
     tgtctgcatt ggggaggcgc agcattgggg attccccact cccacgagtt tcacttcttc       120
     tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc       180
     ccattgggtg tcgggtgtct agagaagcca atcagtgtcg ccggggtccc agttctaaag       240
     tccccacgca cccacccgga ctcagaatct cctcagacgc cgagatgcgg gtcacggcgc       300
     cccgaaccct cctcctgctg ctctgggggg cagtggccct gaccgagacc tgggctggtg       360
     agtgcggggt cggcagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg       420
     gcgcaggacc cggggagccg cgccgggagg agggtcgggc gggtctcagc ccctcctcgc       480
     ccccaggctc ccactccatg aggtatttcc acacctccgt gtcccggccc ggccgcgggg       540
     agccccgctt catcaccgtg ggctacgtgg acgacacgct gttcgtgagg ttcgacagcg       600
     acgccgcgag tccgagagag gagccgcggg cgccgtggat agagcaggag gggccggagt       660
     attgggaccg ggagacacag atctgcaagg ccaaggcaca gactgaccga gaggacctgc       720
     ggaccctgct ccgctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc       780
     aggtcacgac tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag       840
     atccgccccc gaggccgcgg gacccgccca gaccctcgac cggcgagagc cccaggcgcg       900
     tttacccggt ttcattttca gttgaggcca aaatccccgc gggttggtcg gggcggggcg       960
     gggctcgggg ggacggggct gaccgcgggg gcggggccag ggtctcacac cctccagaat      1020
     atgtatggct gcgacgtggg gccggacggg cgcctcctcc gcgggtacca ccagcacgcc      1080
     tacgacggca aggattacat cgccctgaac gaggacctga gctcctggac cgccgcggac      1140
     acggcggctc agatcaccca gcgcaagtgg gaggcggccc gtgtggcgga gcagctgaga      1200
     gcctacctgg agggcgagtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag      1260
     acgctgcagc gcgcgggtac caggggcagt ggggagcctt ccccatctcc tataggtcgc      1320
     cggggatggc ctcccacgag aagaggagga aaatgggatc agcgctagaa tgtcgccctc      1380
     ccttgaatgg agaatggcat gagttttcct gagtttcctc tgagggcccc ctcttctctc      1440
     taggacaatt aagggatgac gtctctgagg aaatggaggg gaagacagtc cctagaatac      1500
     tgatcagggg tcccctttga cccctgcagc agccttggga accgtgactt ttcctctcag      1560
     gccttgttct ctgcctcaca ctcagtgtgt ttggggctct gattccagca cttctgagtc      1620
     actttacctc cactcagatc aggagcagaa gtccctgttc cccgctcaga gactcgaact      1680
     ttccaatgaa taggagatta tcccaggtgc ctgcgtccag gctggtgtct gggttctgtg      1740
     ccccttcccc accccaggtg tcctgtccat tctcaggctg gtcacatggg tggtcctagg      1800
     gtgtcccatg agagatgcaa agcgcctgaa ttttctgact cttcccatca gaccccccaa      1860
     agacacacgt gacccaccac cccatctctg accatgaggc caccctgagg tgctgggccc      1920
     tgggcttcta ccctgcggag atcacactga cctggcagcg ggatggcgag gaccaaactc      1980
     aggacactga gcttgtggag accagaccag caggagatag aaccttccag aagtgggcag      2040
     ctgtggtggt gccttctgga gaagagcaga gatacacatg ccatgtacag catgaggggc      2100
     tgccgaagcc cctcaccctg agatggggta aggaggggga tgaggggtca tatctcttct      2160
     cagggaaagc aggagccctt cagcagggtc agggcccctc atcttccctt cctttcccag      2220
     agccgtcttc ccagtccacc gtccccatcg tgggcattgt tgctggcctg gctgtcctag      2280
     cagttgtggt catcggagct gtggtcgctg ctgtgatgtg taggaggaag agctcaggta      2340
     gggaaggggt gaggggtggg gtctgagttt tcttgtccca ctgggggttt caagccccag      2400
     gtagaagtgt tccctgcctc attactggga agcagcatcc acacaggggc taacgcagcc      2460
     tgggaccctg tgtgccagca cttactcttt tgtgcagcac atgtgacaat gaaggacgga      2520
     tgtatcacct tggtggttgt ggtgttgggg tcctgattcc agcattcatg agtcagggga      2580
     aggtccctgc taaggacaga ccttaggagg gcagttggtc caggacccac acttgctttc      2640
     ctcgtgtttc ctgatcctgc cttgggtctg tagtcatact tctggaaatt ccttttgggt      2700
     ccaagacgag gaggttcctc taagatctca tggccctgct tcctcccagt cccctcacag      2760
     ggcattttct tcccacaggt ggaaaaggag ggagctactc tcaggctgcg tgtaagtgat      2820
     gggggtggga gtgtggagga gctcacccac cccctaattc ctcctgtccc acgtctcctg      2880
     cgggctctga ccaggtcctg tttttgttct actccaggca gcgacagtgc ccagggctct      2940
     gatgtgtctc tcacagcttg aaaaggtgag attcttgggg tctagagtgg gtggggtggc      3000
     aggtctgggg gtgggtgggg cagtggggaa aggcctgggt aatggagatt ctttgattgg      3060
     gatgtttcgc gtgtgtggtg ggctgtttag actgtcatca cttaccatga ctaaccagaa      3120
     tttgttcatg actgttgttt tctgtagcct gagacagctg tcttgtgagg gactgagatg      3180
     caggatttct tcacgcctcc cctttgtgac ttcaagagcc tctggcatct ctttctgcaa      3240
     aggcacctga atgtgtctgc gtccctgtta gcataatgtg aggaggtgga gagaccagcc      3300
     cacccccgtg tccactgtga cccct                                            3325
//