Dbfetch
ID HLA00179; SV 1; standard; DNA; HUM; 2688 BP. XX AC HLA00179; XX SV HLA00179.1 XX DT 09-AUG-1993 (Rel. 1.0.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1) XX DE HLA-B*15:16:01:01, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-B; Allele; HLA-B*15:16:01:01; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-2688 RX PUBMED; 23246585. RA Lind C, Ferriola D, Mackiewicz K, Sasson A, Monos D; RT "Filling the gaps - The generation of full genomic sequences for 15 common RT and well-documented HLA class I alleles using next-generation sequencing RT technology."; RL Human Immunology 74:325-329(2013). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; EF156367; EF156367.1. DR EMBL; JQ771784; JQ771784.1. XX FH Key Location/Qualifiers FH FT source 1..2688 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="African descent, Undefined" FT /cell_line="09-4364" FT /cell_line="NT00690" FT CDS join(1..73,202..471,717..992,1568..1843,1948..2064, FT 2506..2538,2645..2688) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*15:16:01:01" FT /product="MHC Class I HLA-B*15:16:01:01 sequence" FT /translation="MRVTAPRTVLLLLSGALALTETWAGSHFMRYFYTAMSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDRETRNMKASAQTYRENLRI FT ALRYYNQSEAGSHTWQRMYGCDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK FT GGSYSQAASSDSAQGSDVSLTA" FT exon 1..73 FT /number="1" FT intron 74..201 FT /number="1" FT exon 202..471 FT /number="2" FT intron 472..716 FT /number="2" FT exon 717..992 FT /number="3" FT intron 993..1567 FT /number="3" FT exon 1568..1843 FT /number="4" FT intron 1844..1947 FT /number="4" FT exon 1948..2064 FT /number="5" FT intron 2065..2505 FT /number="5" FT exon 2506..2538 FT /number="6" FT intron 2539..2644 FT /number="6" FT exon 2645..2688 FT /number="7" SQ Sequence 2688 BP; 494 A; 799 C; 860 G; 535 T; 0 other; atgcgggtca cggcgccccg aaccgtcctc ctgctgctct cgggagccct ggccctgacc 60 gagacctggg ccggtgagtg cgggtcggga gggaaatggc ctctgtgggg aggagcgagg 120 ggaccgcagg cgggggcgca ggacccgggg agccgcgccg ggaggagggt cgggcgggtc 180 tcagcccctc ctcgccccca ggctcccact tcatgaggta tttctacacc gccatgtccc 240 ggcccggccg cggggagccc cgcttcatcg cagtgggcta cgtggacgac acgcagttcg 300 tgaggttcga cagcgacgcc gcgagtccga ggatggcgcc ccgggcgcca tggatagagc 360 aggaggggcc ggagtattgg gaccgggaga cacggaacat gaaggcctcc gcgcagactt 420 accgagagaa cctgcggatc gcgctccgct actacaacca gagcgaggcc ggtgagtgac 480 cccggcccgg ggcgcaggtc acgactcccc atcccccacg tacggcccgg gtcgccccga 540 gtctccgggt ccgagatccg cccccctgag gccgcgggac ccgcccaaac cctcgaccgg 600 cgagagcccc aggcgcgttt acccggtttc attttcagtt gaggccaaaa tccccgcggg 660 ttggtcgggg cggggcgggg ctcgggggac ggggctgacc gcggggcctg ggccagggtc 720 tcacacttgg cagaggatgt atggctgcga cctggggccg gacgggcgcc tcctccgcgg 780 gcatgaccag tccgcctacg acggcaagga ttacatcgcc ctgaacgagg acctgagctc 840 ctggaccgcg gcggacacgg cggctcagat cacccagcgc aagtgggagg cggcccgtga 900 ggcggagcag ctgagagcct acctggaggg cctgtgcgtg gagtggctcc gcagatacct 960 ggagaacggg aaggagacgc tgcagcgcgc gggtaccagg ggcagtgggg agccttcccc 1020 atctcctata ggtcgccggg gatggcctcc cacgagaaga ggaggaaaat gggatcagcg 1080 ctagaatgtc gccctccctt gaatggagaa tggcatgagt tttcctgagt ttcctctgag 1140 ggccccctct tctctctagg acaattaagg gatgacgtct ctgaggaaat ggaggggaag 1200 acagtcccta ggatagtgat caggggtccc ctttgacccc tgcagcagcc ttgggaaccg 1260 tgacttttcc tctcaggcct tgttctctgc ctcacactca gtgtgtttgg ggctctgatt 1320 ccagcacttc tgagtcactt tacctccact cagatcagga gcagaagtcc ctgttccccg 1380 ctcagagact cgaactttcc aatgaatagg agattatccc aggtgcctgc gtccaggctg 1440 gtgtctgggt tctgtgcccc ttccccaccc caggtgtcct gtccattctc aggctggtca 1500 catgggtggt cctagggtgt cccatgagag atgcaaagcg cctgaatttt ctgactcttc 1560 ccatcagacc ccccaaagac acatgtgacc caccacccca tctctgacca tgaggccacc 1620 ctgaggtgct gggccctggg cttctaccct gcggagatca cactgacctg gcagcgggat 1680 ggcgaggacc aaactcagga caccgagctt gtggagacca gaccagcagg agatagaacc 1740 ttccagaagt gggcagctgt ggtggtgcct tctggagaag agcagagata cacatgccat 1800 gtacagcatg aggggctgcc gaagcccctc accctgagat ggggtaagga gggggatgag 1860 gggtcatatc tgttctcagg gaaagcagga gcccttctgg agcccttcag cagggtcagg 1920 gcccctcatc ttcccctcct ttcccagagc catcttccca gtccaccatc cccatcgtgg 1980 gcattgttgc tggcctggct gtcctagcag ttgtggtcat cggagctgtg gtcgctactg 2040 tgatgtgtag gaggaagagc tcaggtaggg aaggggtgag gggtggggtc tgggttttct 2100 tgtcccactg ggggtttcaa gccccaggta gaagtgttcc ctgcctcatt actgggaagc 2160 agcatccaca caggggctaa cgcagcctgg gaccctgtgt gccagcactt actcttttgt 2220 gcagcacatg tgacaatgaa ggacagatgt atcgccttga tggttgtggt gttggggtcc 2280 tgattccagc attcatgagt caggggaagg tccctgctaa ggacagacct taggagggca 2340 gttggtccag gacccacact tgctttcctc gtgtttcctg atcctgccct gggtctgtag 2400 tcatacttct ggaaattcct tttggttcca agacgaggag gttcctctaa gatctcatgg 2460 tcctgcttcc tcccagtccc ctcacaggac attttcttcc cacaggtgga aaaggaggga 2520 gctactctca ggctgcgtgt aagtggtggg ggtgggagtg tggaggagct cacccacccc 2580 ataattcctc ctgtcccacg tctcctgcgg gctctgacca ggtcctgttt ttgttctact 2640 ccagccagcg acagtgccca gggctctgat gtgtctctca cagcttga 2688 //