ID X03854; SV 1; linear; genomic RNA; STD; VRL; 3289 BP. XX AC X03854; XX DT 18-NOV-1986 (Rel. 10, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Barley stripe mosaic virus (BSMV, Type strain) genomic RNA beta XX KW coat protein; inverted repeat; overlapping genes; tandem repeat; KW unidentified reading frame. XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-3289 RX DOI; 10.1093/nar/14.9.3895. RX PUBMED; 3754962. RA Gustafson G., Armour S.L.; RT "The complete nucleotide sequence of RNA beta from the type strain of RT barley stripe mosaic virus"; RL Nucleic Acids Res. 14(9):3895-3909(1986). XX RN [2] RP 1-3289 RA Gustafson G.; RT ; RL Submitted (10-NOV-1986) to the INSDC. XX DR MD5; dc58b6cb5f2c1b5891c9f3ee48017f29. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX CC Data kindly reviewed (10-NOV-1986) by Gustafson G. XX FH Key Location/Qualifiers FH FT source 1..3289 FT /organism="Barley stripe mosaic virus" FT /strain="type strain (ATCC-PV43)" FT /mol_type="genomic RNA" FT /db_xref="taxon:12327" FT CDS 90..686 FT /note="ORF 1, M(r)22.147 (aa 1-198)" FT /db_xref="GOA:P04866" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="PDB:5A79" FT /db_xref="PDB:5A7A" FT /db_xref="UniProtKB/Swiss-Prot:P04866" FT /protein_id="CAA27484.1" FT /translation="MPNVSLTAKGGGHYIEDQWDTQVVEAGVFDDWWVHVEAWNKFLDN FT LRGINFSVASSRSQVAEYLAALDRDLPADVDRRFAGARGQIGSPNYLPAPKFFRLDKRT FT IAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSALHYQ FT YVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA" FT CDS 804..2390 FT /note="ORF 2, M(r)58.098 (aa 1-528)" FT /db_xref="GOA:P04867" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P04867" FT /protein_id="CAA27485.1" FT /translation="MDMTKTVEEKKTNGTDSVKGVFENSTIPKVPTGQEMGGDGSSTSK FT LKETLKVADQTPLSVDNGAKSKLDSSDRQVPGVADQTPLSVDNGAKSKLDSSDRQVPGP FT ELKPNVKKSKKKRIQKPAQPSGPNDLKGGTKGSSQVGENVSENYTGISKEAAKQKQKTP FT KSVKMQSNLADKFKANDTRRSELINKFQQFVHETCLKSDFEYTGRQYFRARSNFFEMIK FT LASLYDKHLKECMARACTLERERLKRKLLLVRALKPAVDFLTGIISGVPGSGKSTIVRT FT LLKGEFPAVCALANPALMNDYSGIEGVYGLDDLLLSAVPITSDLLIIDEYTLAESAEIL FT LLQRRLRASMVLLVGDVAQGKATTASSIEYLTLPVIYRSETTYRLGQETASLCSKQGNR FT MVSKGGRDTVIITDYDGETDETEKNIAFTVDTVRDVKDCGYDCALAIDVQGKEFDSVTL FT FLRNEDRKALADKHLRLVALSRHKSKLIIRADAEIRQAFLTGDIDLSSKASNSHRYSAK FT PDEDHSWFKAK" FT repeat_region 957..1034 FT /note="tandem repeat" FT repeat_region 997..1011 FT /note="imp. inverted repeat" FT repeat_region 1035..1112 FT /note="tandem repeat" FT repeat_region 1075..1089 FT /note="imp. inverted repeat" FT CDS 2359..2754 FT /note="ORF 4, M(r)14.119 (aa 1-131)" FT /db_xref="GOA:P04869" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P04869" FT /protein_id="CAA27486.1" FT /translation="MKTTVGSRPNKYWPIVAGIGVVGLFAYLIFSNQKHSTESGDNIHK FT FANGGSYRDGSKSISYNRNHPFAYGNASSPGMLLPAMLTIIGIISYLWRTRDSVLGDSG FT GNNSCGEDCQGECLNGHSRRSLLCDIG" FT CDS 2564..3031 FT /note="ORF 3, M(r)17.378 (aa 1-155)" FT /db_xref="GOA:P04868" FT /db_xref="InterPro:IPR007617" FT /db_xref="UniProtKB/Swiss-Prot:P04868" FT /protein_id="CAA27487.1" FT /translation="MAMPHPLECCCPQCLPSSESFPIYGEQEIPCSETQAETTPVEKTV FT RANVLTDILDDHYYAILASLFIIALWLLYIYLSSIPTETGPYFYQDLNSVKIYGIGATN FT PEVIAAIHHWQKYPFGESPMWGGLISVLSILLKPLTLVFALSFFLLLSSKR" FT misc_feature 3032..3051 FT /note="internal polyA tract" FT misc_feature 3052..3289 FT /note="tRNA-like structure" XX SQ Sequence 3289 BP; 953 A; 661 C; 755 G; 920 T; 0 other; gtaaaagaaa aggaacaacc ctgttgttgt tcgacgctat actaaatata tattatctta 60 ttagtgcatt tcttttaccg cttcacagta tgccgaacgt ttctttgact gctaagggtg 120 gaggacacta catcgaggat caatgggata cacaagttgt ggaagccgga gtatttgacg 180 attggtgggt ccacgtagaa gcctggaata aatttctaga caatttacgt ggtatcaact 240 ttagcgttgc ttcctctcgg tcgcaagtcg ctgaatactt agctgcgtta gatcgtgatc 300 tacctgctga tgtagacaga cggtttgcag gtgctagggg acaaattggt tcacccaatt 360 atcttcctgc gccaaaattc tttcgtctcg ataagcgaac tatcgctgaa ctgactagac 420 tctctcgtct tacggatcag ccgcacaaca atcgcgatat agaacttaac cgagcgaaaa 480 gagccacaac taacccatct cccccggcgc aggcaccgtc ggagaatctc actcttcgtg 540 atgttcaacc gttaaaggat agtgcgttgc attatcaata cgtgttgatt gacctacaga 600 gtgcgagact cccggtgtat accaggaaga ctttcgaacg tgaactcgct ttggaatgga 660 tcattccaga tgccgaggaa gcgtgacctg ctgtcgaagc ggtaaaagga tgtacatatg 720 tatcttattt attttgttta tctattttct tttgctttta gtttttgctt tttacgcatt 780 aactagatgt attgacttta gccatggaca tgacgaaaac tgttgaggaa aagaaaacaa 840 atggaactga ttcagtgaaa ggtgtttttg aaaactcgac gattcccaaa gttccgactg 900 gacaggaaat gggtggtgac ggttcttcta cttctaaatt aaaggaaact ctgaaagttg 960 ccgatcagac tccattgtcc gttgacaatg gtgccaaatc caaattggat tcctctgata 1020 gacaagttcc tggagttgcc gatcagactc cattgtccgt tgacaatggt gccaaatcca 1080 aattggattc ctctgataga caagttcctg gacctgagtt gaaacccaac gttaagaagt 1140 ccaagaagaa aagaatccaa aaacctgctc aaccgagtgg gcccaatgac cttaaaggcg 1200 ggactaaggg atcatctcaa gtgggtgaaa atgtgagtga gaactatact gggatttcta 1260 aggaagcagc taagcaaaag cagaagacgc ccaagtctgt gaaaatgcaa agcaatctgg 1320 ccgataagtt caaagcgaat gatactcgta gatcggaatt aattaacaag tttcagcaat 1380 ttgtgcatga aacctgtctt aaatctgatt ttgagtacac tggtcgacag tatttcagag 1440 ctagatcaaa tttctttgaa atgattaagc tcgcatcctt gtatgacaaa catctaaagg 1500 aatgtatggc gcgagcctgc accctagaac gtgaacgatt gaagcgtaag ttactcctag 1560 tacgagcttt gaaaccagca gttgacttcc ttacgggaat catctctgga gttcctggct 1620 caggaaaatc aaccattgtg cgtactttgc tcaaaggtga atttccggct gtttgtgctt 1680 tggccaatcc tgccttaatg aacgactatt ctggtattga aggcgtttac gggttagatg 1740 acctgttgct ttctgcagtt ccgataacgt ctgatttatt gatcatagat gaatatacac 1800 ttgctgagag cgcggaaatc ctgttgttac aacgaagact cagagcctct atggtgttgt 1860 tagtcgggga tgtagctcaa ggaaaagcca ccactgcttc cagtattgag tatttaactc 1920 tgccggtgat ctacagatca gagacgactt atcgtttggg acaagagact gcttcgcttt 1980 gcagcaagca gggtaacaga atggtttcaa agggtggaag ggacacagtg atcattactg 2040 attacgatgg cgaaacagat gaaacggaga aaaatatcgc ttttactgtc gatacagttc 2100 gagatgtgaa agattgcggg tacgattgtg ccctggcaat tgatgtgcaa gggaaagaat 2160 tcgattcagt gactttattc ctaaggaacg aagaccggaa agctttagca gataagcatt 2220 tgcgtttagt cgctttgagc agacataagt cgaagttaat catcagggcc gacgcggaaa 2280 ttcgtcaagc attcctgaca ggtgatattg acttgagctc taaggcgagt aactctcatc 2340 gttattctgc aaaaccggat gaagaccaca gttggttcaa ggccaaataa gtattggcca 2400 attgtcgccg gaatcggtgt cgttggattg tttgcgtatt tgatcttttc aaatcaaaaa 2460 cattctacgg aatccggtga taatattcac aaattcgcca acggaggtag ttacagagac 2520 gggtcaaaga gtataagtta taatcgtaat catccttttg cctatggcaa tgcctcatcc 2580 cctggaatgt tgttgcccgc aatgcttacc atcatcggaa tcatttccta tttatggcga 2640 acaagagatt ccgtgctcgg agactcaggc ggaaacaact cctgtggaga agactgtcag 2700 ggcgaatgtc ttaacggaca ttctcgacga tcattactat gcgatattgg ctagtctttt 2760 tatcattgct ctatggctat tgtatatata tctaagcagt atacctacgg agactggtcc 2820 ctacttctat caagatctga actctgtgaa gatctatgga ataggggcta cgaacccaga 2880 agttattgcg gccatccacc attggcagaa gtaccctttt ggggaatctc cgatgtgggg 2940 aggtttaatc agtgttttga gtattcttct taaaccgctg acattagttt ttgcgttaag 3000 cttttttctc ttactttctt caaaaaggta aaaaaaaaaa aaaaaaaaaa atgtttgatc 3060 agatcattca aatctgatgg tgcccatcaa ccatatgatg ggagtgtttg caagtccact 3120 ataatcgaac ttgaaaacaa tgcctgaatt ggaaaccatg aatcttaacg gattctggag 3180 agaaaattta ggaattggta tgtaagctac aacttccggt agctgcgtca cactttaaga 3240 gtgtgcatac tgagccgaag ctcagcttcg gtcccccaag ggaagacca 3289 //