ID U35768; SV 1; linear; mRNA; STD; VRL; 3783 BP. XX AC U35768; XX DT 11-OCT-1995 (Rel. 45, Created) DT 08-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Barley stripe mosaic virus Type strain RNA alpha, alpha protein gene, DE complete cds. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RX DOI; 10.1016/0378-1119(88)90175-8. RX PUBMED; 3246352. RA Petty I.T., Hunter B.G., Jackson A.O.; RT "A novel strategy for one-step cloning of full-length cDNA and its RT application to the genome of barley stripe mosaic virus"; RL Gene 74(2):423-432(1988). XX RN [2] RX DOI; 10.1016/0042-6822(89)90601-6. RX PUBMED; 2763456. RA Petty I.T., Hunter B.G., Wei N., Jackson A.O.; RT "Infectious barley stripe mosaic virus RNA transcribed in vitro from RT full-length genomic cDNA clones"; RL Virology 171(2):342-349(1989). XX RN [3] RP 1-3783 RA Edwards M.C.; RT ; RL Submitted (08-SEP-1995) to the INSDC. RL Michael C. Edwards, U.S. Dept. of Agriculture, Agricultural Research RL Service, Northern Crop Science Laboratory, 1307 18th Street North, Fargo, RL ND 58105-5677, USA XX DR MD5; 107e0b1e11d72ab3024242d29cf2f035. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3783 FT /organism="Barley stripe mosaic virus" FT /chromosome="RNA alpha" FT /host="Hordeum vulgare" FT /lab_host="Hordeum vulgare" FT /strain="Type" FT /mol_type="mRNA" FT /clone="pTypealpha10" FT /note="This sequence is that of a full-length clone from FT which infectious RNA transcripts can be made." FT /db_xref="taxon:12327" FT CDS 92..3508 FT /codon_start=1 FT /product="alpha protein" FT /db_xref="GOA:Q65716" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q65716" FT /protein_id="AAA79147.1" FT /translation="MASDEIVRNLISREEVMGNLISTASSSVRSPLHDVLCSHVRTIVD FT SVDKKAVSRKHVDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYL FT LDMVPMKETFVYDIGGNWFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGS FT KDKPLRLLSRYQNILREQAARTTAFMAGEVNAGVLDGDVFCENTFQDCVRQVPEGFLKT FT AIAVHSIYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGR FT IKFFFANDPNAGYSHDLKDYLKYVEKTYVDIKDGVFAIELMQMRGDTMFFKITDVTAAM FT YHMKYRGMKRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKN FT KEKDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENS FT IISYFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICD FT PVLYVEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKVTGTVTEC FT EKDLGPLVQPIKQILVQLVMPNLVRALCRPRSPTSPLDLNIPGSTPSHSSSDSEQSMTE FT EASCAIAGSVPTWEIATKKDLTFQRIDEDMSRRTGMPPRPKVTSSYNMNARAEFLYYQL FT CSVICERAQILSVIEDFRQNLIFSDKVAVPLNARFYSFQSLQPGWVFKTPSHSEVGHSY FT AVHFDFKTVGTDLEESLAFCRMVPISWDKSGKYIATTPHFPERHGYYVICDNTKLCNNW FT LIYNKLVDVYARVADRPLRFELIDGVPGCGKSTMILNSCDIRREVVVGEGRNATDDLRE FT RFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIMFCADKLGA FT SEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYLSAKEFYK FT VKGIPQKVTTFNSVKRSLYARGETTPERFVSLLDVPVRKNTHYLTFLQAEKESLMSHLI FT PKGVKKESISTIHEAQGGTYENVILVRLQRTPNEIYPGGPRSAPYIVVGTSRHTKTFTY FT CSVTDDKLLLDIADVGGIAHTPIRTFESHIV" XX SQ Sequence 3783 BP; 1115 A; 710 C; 884 G; 1074 T; 0 other; gtatgtaagt tgcctttggg tgtaaaattt cttgcatgca cacaatcgta atcgattctt 60 cttgatctct aaacaacact ttcccgttag catggctagc gatgagattg tccgcaatct 120 gatctcccgt gaggaggtga tgggtaattt gattagcaca gcttctagct cagtaaggtc 180 acccttacat gacgtactgt gctcgcacgt aaggaccatc gtcgattccg tggataagaa 240 agcggtcagt cgcaagcatg ttgatgtacg gcgcaacatc tcctctgaag agttacagat 300 gttgataaat gcatatcctg aatatgccgt ttcatcctca gcttgtgaat ctggtactca 360 tagcatggcg gcttgttttc gatttctgga gacagaatac ctcttagata tggttccaat 420 gaaagagact tttgtttatg acattggtgg taactggttt tctcatatga agtttcgtgc 480 tgatagagaa attcattgtt gctgtccgat cttatctatg agagattctg aaagactgga 540 aacacgcatg atggcaatgc aaaaatatat gcgtggatcg aaagacaaac cgttacgctt 600 gttaagccgt tatcaaaata tcctgcgtga acaagcggcg agaacaactg cctttatggc 660 aggtgaggtg aatgcgggtg ttctcgatgg agatgtgttt tgtgagaaca cttttcaaga 720 ctgtgtgaga caggtgcccg aaggtttttt gaagacagct atagcagttc atagcatcta 780 cgatatcaaa gtggaagaat ttgcgtctgc attgaaaaga aaaggtataa cacaggctta 840 tgggtgcttc ctgtttcctc ctgctgtatt gataggtcag aaggaaggta ttttaccttc 900 cgtggacggt cattacttgg tggagaatgg caggattaag ttcttctttg cgaatgatcc 960 gaatgccggt tactctcatg accttaagga ttatctgaag tatgtggaaa aaacctacgt 1020 ggatataaag gatggagtgt ttgctattga gctgatgcaa atgcgaggtg ataccatgtt 1080 ctttaagatc acggatgtca ccgcagcaat gtatcatatg aaatacagag gtatgaaacg 1140 tgatgaaaca ttcaaatgca ttccgttgct aaaaaattca tccgttgtcg tacctctatt 1200 ttcgtgggac aaccgttctt taaagatcac aagtggttta ttaccacgaa ctttggtcga 1260 gcaaggtgcg gcgtttatta tgaaaaacaa ggagaaggac ttgaacgttg ctgtgttgaa 1320 gaactatctt tccgctgtga acaactcata cattttcaac ggatcccagg ttagagatgg 1380 tgtgaaaatt gccccggatt taatctccaa attggcagtg actctgtacc tgagagaaaa 1440 ggtctatcga caaagagaaa attcaatcat aagttatttc gagcaagaaa tgcttcacga 1500 tcccaacttg aaagccatgt ttggagactt tctgtggttt gttccaaata ctctctcgag 1560 tgtctggaag aacatgcgaa aatcactgat ggaatggttt ggctacgcag aatttgactt 1620 gactactttt gatatttgcg atcccgttct ctacgtagag atagtggatc ggtataagat 1680 cattcaaaaa gggcgaattc cacttggtga gttttttgat tgtcatgaag aatgcgagaa 1740 ttacgaactg cgtgagaagg agaaaaatga cctagcggtg aaaatggccc agaaggtaac 1800 agggacggtg accgaatgcg agaaggacct gggacctctt gttcaaccga taaaacagat 1860 attggttcaa cttgtgatgc ccaatttggt cagagcgctg tgtagacctc gtagcccaac 1920 gtctcctttg gacttaaata tcccagggtc aactccatca cactcaagtt cagattctga 1980 acaatctatg actgaagaag cgagctgcgc cattgcgggt agcgtaccaa catgggaaat 2040 tgcgactaag aaagatctaa cctttcagcg aattgatgaa gatatgtctc gacgaactgg 2100 tatgcctcca agaccaaaag taacttctag ttacaacatg aatgccagag ctgagtttct 2160 ctactatcaa ctgtgtagcg tgatttgtga aagggctcag attttgagtg tcatcgaaga 2220 ctttcgtcag aatttgatat tctcagataa agtggccgtt ccattgaacg ctagattcta 2280 cagttttcag tcattgcaac ccggatgggt gttcaagact ccatcgcata gtgaagtagg 2340 ccacagttat gcagtacatt ttgacttcaa gacagttgga accgatttgg aagagagcct 2400 agctttttgc cgaatggtac cgatttcatg ggataaaagc ggcaaataca tcgcgacaac 2460 tcctcatttt cccgagagac atggttacta cgtgatttgt gacaacacta aattgtgtaa 2520 caattggctt atttacaata agttagttga tgtctacgca cgagtggctg atagacctct 2580 gagatttgag ttgattgacg gagttcctgg ctgcggaaag tcaaccatga ttttaaacag 2640 ctgtgatatt cgacgcgaag ttgttgttgg tgaaggaagg aatgcaactg atgacttaag 2700 ggagaggttc aagcgtaaga aaaatttgaa tagtaagact gctaatcata gagttcgaac 2760 gcttgacagc ttattacttg ctgaaggacc ttgtgtaccg caagctgata ggtttcattt 2820 tgatgaagct ctaaaagttc attacggcgc cataatgttc tgtgctgata agcttggtgc 2880 ctcagaaatt ctcgctcagg gagatagggc tcaactgccg atgatctgtc gtgtagaagg 2940 tattgaactt caatttcaat ctcctgatta cacgaagacg atcataaatc ctaagctacg 3000 atcataccgt atccctggag atgttgcctt ctatttgagt gctaaggaat tttacaaagt 3060 taaaggaata cctcaaaagg ttacaacttt taacagtgtg aaacgttccc tgtacgctag 3120 aggcgaaaca actccggaaa gattcgtgag tttgcttgat gttccggtga gaaaaaacac 3180 ccattatcta accttcttac aagctgagaa ggaaagtttg atgagtcatt tgattccaaa 3240 gggtgtgaag aaagagtcta tttcaacgat tcatgaggcg cagggtggta cctatgaaaa 3300 tgtgattctg gtccgtttgc aacggacgcc caatgaaatt tatccgggtg gacctaggtc 3360 cgccccttac attgtggttg ggacttcaag gcatacaaaa actttcactt attgtagtgt 3420 tacggacgat aagttgcttt tagatatcgc cgacgtcggt ggtattgcac atacacctat 3480 tcgtactttt gaatctcata tagtttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3540 aaaaatgttt gatcagatca ttcaaatctg atggtgccca tcaaccatat gatgggagtg 3600 tttgcaagtc cactataatc gaacttgaaa acgatgcctg aattggaaac catgaatctt 3660 aacggattct ggagagaaaa tttaggaatt ggtatgtaag ctacaacttc cggtagctgc 3720 gtcacacttt aagagtgtgc atactgagcc gaagctcagc ttcggtcccc caagggaaga 3780 cca 3783 //