ID U32108; SV 1; linear; genomic RNA; STD; VRL; 5241 BP. XX AC U32108; XX DT 03-NOV-1995 (Rel. 45, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Leishmania RNA virus 2-1, complete genome. XX KW . XX OS Leishmania RNA virus 2 - 1 OC Viruses; Riboviria; Totiviridae; Leishmaniavirus. XX RN [1] RP 1-5241 RX DOI; 10.1006/viro.1995.1456. RX PUBMED; 7676652. RA Scheffter S.M., Ro Y.T., Chung I.K., Patterson J.L.; RT "The complete sequence of Leishmania RNA virus LRV2-1, a virus of an Old RT World parasite strain"; RL Virology 212(1):84-90(1995). XX RN [2] RP 1-5241 RA Scheffter S.M.; RT ; RL Submitted (21-JUL-1995) to the INSDC. RL Scott M. Scheffter, Microbiology and Molecular Genetics, Harvard Medical RL School, 300 Longwood Avenue, Boston, MA 02115, USA XX DR MD5; ed1bb5ab2db63938e1f4f3d6dae4bed0. DR EuropePMC; PMC3659425; 20976609. DR EuropePMC; PMC5086604; 27690081. XX FH Key Location/Qualifiers FH FT source 1..5241 FT /organism="Leishmania RNA virus 2 - 1" FT /host="Leishmania major" FT /lab_host="Leishmania major" FT /mol_type="genomic RNA" FT /db_xref="taxon:39116" FT CDS 197..316 FT /codon_start=1 FT /product="unknown" FT /function="possible role in regulating internal translation FT initiation" FT /db_xref="UniProtKB/TrEMBL:Q83071" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAB50029.1" FT /translation="MVCRSVRPAILILTPVDAGKNRVMGWHPAPYVFQSLVYY" FT CDS 341..2485 FT /codon_start=1 FT /product="major capsid protein" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q83072" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB50030.1" FT /translation="MTSPIPQMNTSVFNLTRGRRVVSGDTSERVYTAVLNYCSTVRQSY FT QATTNVHWRLKQRGKKASHVSRAHAGISASFDYADNLKQEILKYHSRHVCTEIVVGRDY FT RFDFRSLLHHAGACMAHYCLTGVLDLNVLSSGKSGGTRVTVLSNADGLSILATDVLYLP FT NALKMMDINIFNCIYLLAAACECNIVFDDVILTGGTSAYNVPALNSVTVEYAPTLHNYI FT SVAFTSNGDGGCDGALALTAGLHTVVTVVAHSDEGGQMRDVLRALHYAPAKGIVVADPN FT RTVNHSLPLLMYEPTWDSVCGMWDYVAVATAGLVHLCDPCELIAHDVYPTIITAPDENN FT VRAIEARVEAALPAFASIYIHNLAMFMGVGGDDCGRAVDTLVEAGVYIYSLTGNDASRH FT MLKGTMAPWFWVESTGLFRDLTCFNIPGLSAGYGPQAIYGTAITQPAMQACEYTGTRGS FT YDYYNVGWTSLRKHPLLVLTNNRAGDGIAHMEVGRDAAIPWVLLGQPQRRECTAQGHGT FT QTATCGHTKHNRGTLDEYIWGRFSTGLFHPAELTTFTNVEFRVKCWTEDNDGNVLETGA FT PVKDIVEGGVTVSVNAILLTNSTNHIRTVPAVRRSYQAGAKYLEEARSRGTMSTLNRII FT GGQLFRDLQPISKRGVPPQPEPVCASMPVETTKEVSLSRIGPIRINQNVFRPRPQPTEE FT EMHEEPTPVALEAEPPGENV" FT CDS 2858..5191 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /function="transcriptase, replicase" FT /note="putative RNA-dependent RNA polymerase; RDRP" FT /db_xref="GOA:Q83073" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q83073" FT /protein_id="AAB50031.1" FT /translation="MRAKLTKVVEGDLSVFMPNARIKRESQNASDLHHFLESVVEGIAI FT PQPDSLILSLEGVLGHKYKLKQHIGASTKVNIHASEVIAGSRKYARTVYRQYVQMSSLF FT SGMYDDHVAGILLYSISTLKHCDVHVAMAYAIAAVRDLTQSVIADLSDVLKLRALAAWC FT PNYVELKCLRGRGIAELDVIAEAKQRLKKPTHPYAYADNEELLRNAIRRVFDEELPRDK FT VVLRPKDDFWSSRWLWAANGGHSRALEHAHPELRTRKEVRAYRKCVLEQWRNNPMDAWD FT GQVYVTPSQKLEHGKSRLLLACDTLSYLWFEYYLKPVETAWLNKRTLLNPGVVNHYSMA FT KKVKVLLADAEHDETNIERGTKLYSLDFEDFNSQHSLAAQKMVFEELFKHVGIENEETR FT KVVSSFERMIVYNGKEPLGRVHGTLMSGHRATTFINTILNTAYLYVAGLHTDFSYHVGD FT DVIFSTGCAEAARLYDCLKHYGVRCNPHKQCASEYSGEFLRVAHTKHYSTGYVARAIAS FT CVSGNWVSDHVLDRREALTNAISCVRTIMNRTQSDEDNPIGRVVALSVAKRCCVEEKHI FT RKLLYGKACLGEGVIYGKLCSSATKVDINVNMDYDKTRTFKYEMFATADYLRHHTSYAE FT SVMLRQYGADIADIMAQSSWMKSMEASSRVSPSSMRVTLSRSDLGVFTMPVCDVERFPV FT RKGVFEKYPLLMMIKERIPLREALDLAQGIGYIAPHGCAEDLWGGTMRLCAIDGVLPYA FT MLVNWHAPVPCNGVRLVVDHNVYA" XX SQ Sequence 5241 BP; 1467 A; 1084 C; 1330 G; 1360 T; 0 other; gaattcaaac ccaatcttca gggattgctg gtttggattc agagctcact ataaatagtg 60 gataaagctc ctcaggtcga gtgaatcggc ccactggtag ggtaatactg acgacccagt 120 gttcaatagt tgcttaagtt tcgtgctgga gctacccggc tgtaaaaccc gatagttaat 180 cactcgcgtc acctcaatgg tttgtcggtc tgtaaggcct gcgattctta ttctaacacc 240 tgttgatgcc ggaaaaaata gggtaatggg ttggcacccc gctccgtacg ttttccagtc 300 tctggtctac tattgaatct caatctatat ccactgcaaa atgacttcac cgattccaca 360 aatgaataca tctgtattca atctaactcg aggtcgacgt gttgtatcag gagatacatc 420 tgaaagagtt tacacggcgg tcctcaacta ttgctcgaca gttcgtcagt cttaccaggc 480 tacgacgaat gttcattggc gtctaaaaca gagaggaaaa aaggcgtcac atgtaagccg 540 ggcacacgct ggtatttctg catcatttga ttatgctgat aacttgaaac aggagatact 600 aaaataccac tctcgacatg tgtgtacaga gatagtcgta ggtcgagatt acaggttcga 660 ttttcgtagc ttgttacatc atgcaggggc ttgtatggct cactactgtt tgactggcgt 720 tttggacttg aacgtactca gcagtggtaa gtcaggtggt acgcgagtca ctgtgttatc 780 aaacgctgat gggttgtcga tcttagcgac ggacgtctta tacctaccga acgcactcaa 840 gatgatggat ataaatatat tcaattgtat atatctgctt gctgctgcat gtgagtgtaa 900 catcgttttt gatgatgtta ttttaactgg gggcacttca gcatacaacg taccagccct 960 aaactcagtc acagtggagt atgcacctac actacacaat tatatatctg ttgcatttac 1020 aagcaacgga gatggcggtt gtgatggagc attggcactt acggcaggtt tacatactgt 1080 tgtaacagtc gttgcgcaca gtgacgaagg aggacagatg cgtgatgttt tgcgagcgct 1140 acactatgca ccggcgaaag gtatcgtcgt ggctgaccca aaccgtactg tcaaccattc 1200 gctaccatta ctgatgtatg aaccaacgtg ggattctgtt tgtggtatgt gggattacgt 1260 ggctgtggca acagcaggtt tggtacactt gtgcgaccca tgtgagttaa tagctcatga 1320 tgtctaccca acgataatca ctgctcccga tgagaacaac gtacgtgcaa tagaagctcg 1380 tgttgaggct gcactaccag ctttcgcttc gatatacatc cataatctgg caatgttcat 1440 gggtgtaggt ggcgacgatt gcggacgtgc ggtagatacg ttggttgaag ccggtgttta 1500 tatctactca cttacaggca atgatgccag tcgtcatatg ctcaagggaa ctatggcacc 1560 ctggttctgg gttgagtcta caggcttgtt ccgggacctc acgtgcttca atatacctgg 1620 tttgagcgct ggctatggtc ctcaagcgat atatggcaca gccattaccc agccagccat 1680 gcaagcttgc gaatatacag gtactcgagg atcatacgat tattacaatg tcgggtggac 1740 atcattacgc aagcacccgc ttcttgtcct tacaaacaac agagctggtg acggcattgc 1800 acatatggag gtagggcgtg atgcggccat accgtgggtc ttgctgggac aaccacaaag 1860 acgtgagtgt actgcgcaag gtcacgggac ccagactgca acgtgtggac atacaaaaca 1920 caatcgaggg actttggatg aatatatctg gggtagattt tccacgggcc tattccaccc 1980 agccgagcta acaaccttta ctaacgtgga gttccgcgtt aagtgttgga cggaagacaa 2040 tgacggtaac gtactcgaaa caggtgcacc agtcaaggat attgtggaag ggggggttac 2100 tgtgagtgtg aacgcaatac tacttacaaa ttccaccaat cacatacgta cggtaccagc 2160 agtccgacgt agttaccaag ctggcgcgaa gtatctcgaa gaagcacgaa gccgtggtac 2220 gatgtctaca cttaatagaa taataggagg acaacttttt agggatcttc aacctataag 2280 caagcgaggg gtgccgccac agcccgagcc tgtatgtgca agcatgcctg ttgaaacaac 2340 gaaagaggtt agtctgtcaa ggatcggacc aattcgtatc aaccaaaacg ttttcagacc 2400 acgaccacaa cctacagaag aagagatgca tgaagaacca acgccagtag cgctcgaagc 2460 agagccacca ggcgaaaatg tgtaagtgac ggattgggag tctaagttca agagtaggtt 2520 ggcaaacgtg gttgaactgt taaggtatga tgcactaaca gagccctgtg gcggggaaac 2580 taaccttaga gtgagcgaag aaacatgctc cggaatccca gtacttcagg aggcgtgtat 2640 tcgaagattt gtggaggaaa ggttcaattt tatagcaaga attactggaa agagtgatcg 2700 gcaggggcgg tggagagcag ttattaaata cgtgttctca gtccctcatt atacaaacat 2760 acacgacacc aagatttttg gtgtaacgat tactaagaat aatattcacc gcatattatt 2820 catatttgct tgtgtcttga tattttgcac ctacgaaatg cgagcgaaac tcacaaaagt 2880 tgttgaaggt gatttatctg tatttatgcc aaatgcaaga attaaacgtg agtcacaaaa 2940 tgcgagcgat ctacatcatt tccttgaatc agtggttgag ggcatcgcta taccacagcc 3000 tgactccctg atattatcgc tggagggagt gttgggtcat aagtacaaac ttaagcaaca 3060 tattggtgca agtacaaaag ttaacatcca tgctagcgag gtgattgcag gaagtcgtaa 3120 atatgctcgt acggtatata gacagtacgt gcaaatgagt agtctttttt cgggcatgta 3180 tgatgatcac gttgctggta tattgttgta cagcatatca acgttgaagc actgtgatgt 3240 tcatgtggct atggcctatg cgattgcagc agtcagagac ttaacacaaa gtgtgatcgc 3300 ggacttaagt gatgtactca agctgcgtgc actagcagct tggtgtccca attatgttga 3360 gctaaagtgc ctacgtggtc gaggcattgc tgagcttgat gttattgctg aagcaaagca 3420 gcgcctaaag aaaccaacac acccatatgc ttatgctgat aacgaagagc tactacgtaa 3480 cgctattcga agagtctttg atgaagagtt gccaagagac aaagtggtgt tgaggcccaa 3540 agatgacttt tggtcgtctc gctggctatg ggcggctaat ggcggtcatt cacgagcact 3600 agaacatgca cacccagaac tgcgaactcg aaaagaagtc cgagcgtatc gtaagtgtgt 3660 gctcgagcag tggcggaata acccgatgga cgcgtgggat ggtcaggtat atgttacacc 3720 cagtcagaaa ttagagcatg gcaagagcag actcctgctg gcgtgtgaca ctctttctta 3780 cctatggttt gagtattacc taaagcctgt tgaaacagcg tggttgaata aacgcacgct 3840 gctcaacccc ggtgttgtta accattattc aatggctaag aaagttaaag tgttattggc 3900 tgacgcagaa cacgatgaaa ctaatattga gcgcgggaca aagctgtata gcctggattt 3960 tgaagacttc aattcacagc actcactagc tgctcagaaa atggtgtttg aagagctatt 4020 caaacatgtt ggtattgaaa atgaggaaac acgaaaagta gtgagcagct tcgagcgaat 4080 gatagtgtac aatgggaaag agcctctagg tcgagtacat ggcacattaa tgagcggaca 4140 ccgtgctaca acttttatta acaccatatt aaacactgcg tatctatatg ttgccgggtt 4200 acacaccgat ttctcatatc acgttggtga cgatgtcata ttcagtacgg gctgtgctga 4260 ggctgcacgt ttgtatgatt gtctaaaaca ttatggcgtg cggtgtaacc cacataaaca 4320 gtgtgcaagt gaatatagtg gtgagttctt acgcgttgct cacacgaaac actatagtac 4380 tgggtatgtc gcacgtgcta ttgcaagctg tgtcagcggt aattgggtgt ctgatcacgt 4440 cttggaccgg cgagaagcat tgacaaatgc tatatcatgt gtcagaacga ttatgaatcg 4500 tacacaatct gatgaggaca atccaatagg tcgtgttgta gcactaagcg ttgcgaagcg 4560 atgttgtgtc gaagaaaaac acatacgcaa attactgtac ggtaaagctt gtttgggcga 4620 aggcgtaatc tacgggaagc tgtgcagcag tgcgacgaaa gttgatataa atgtcaatat 4680 ggattatgac aagacacgga cattcaaata tgaaatgttt gccacagcgg attatctacg 4740 acaccataca tcatacgctg agagtgtgat gctgcgacaa tacggtgctg acatagctga 4800 tatcatggcc cagtcaagct ggatgaaatc catggaggca agctcacgag tcagtccttc 4860 aagtatgcgc gtcacgttgt cacgtagtga tttaggtgta ttcacgatgc cagtatgtga 4920 tgttgaacgt ttcccagtcc gtaaaggcgt gtttgaaaaa tatccattat tgatgatgat 4980 caaagaacga ataccattac gcgaggcact agatctggca cagggaatag gatacattgc 5040 cccacatggt tgtgcggagg atctttgggg cggaactatg cgtttgtgtg caatagacgg 5100 tgtattaccg tatgcgatgc ttgtcaattg gcatgcgccg gtaccatgta acggagtgag 5160 gctagtcgta gaccacaatg tctacgcata attgaccgag ctaggcgtac ctagcaatgt 5220 gcgaaggggc attgcgagtc t 5241 //