ID KC706545; SV 1; circular; genomic DNA; STD; VRL; 2629 BP. XX AC KC706545; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo170s:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2629 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2629 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; ce7230f2f7cd111d145149d56cc221f2. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2629 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Sida sp." FT /isolate="BR:Flo170s:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 199..954 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QN37" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QN37" FT /protein_id="AGH29653.1" FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(951..1349) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJC6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJC6" FT /protein_id="AGH29654.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFATDKQYVNAVLENHSIKFKIY" FT CDS complement(1096..1485) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QW87" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QW87" FT /protein_id="AGH29656.1" FT /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1427..2488) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ54" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ54" FT /protein_id="AGH29655.1" FT /translation="MPPPRHFRVNSKNYFLTYPHCYLSKEEALSQLLALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSSSDVKS FT YVEKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQ FT HHNIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIII FT EGDSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIG FT AQKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIF FT LNSPLYQSSTSGC" FT CDS complement(2032..2331) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLI5" FT /protein_id="AGH29652.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR FT ARQMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2629 BP; 689 A; 554 C; 603 G; 783 T; 0 other; accggatggc cgcgcgattt tttttaaggc ccattcagtt tgggccgctc ttttgggcct 60 tcacctttaa ttttaatgaa agtaaatttg gcccaatcat gatgcatctg acaagctaag 120 atatttacaa ctacttaacg cccaagttgc ataacggcta taaattaaat gtgcatatgt 180 cgttaacttt aattcaaaat gcctaagcgc gatgccccat ggcgccacat ggctagtaca 240 gttaagatta gccggggcgt taatagttct cctcgagcag gagttgggcc acggtctaac 300 aaggcctctg actgggtaaa caggcccatg tacaggaagc ccaagatata tcggatgtat 360 agaacacccg atgttccaag aggttgtgaa ggcccatgta aagtccaatc gtttgaacag 420 cgtcacgata tctcccatac tggtaaggtg atgtgcgtct ccgatgtcac ccgtggtaac 480 ggtattacac atcgtgtggg taagcgtttc tgtgttaagt ctgtgtatat tctgggtaag 540 atatggatgg atgagaacat caagttgaag aaccacacga acagtgccat gttttggttg 600 gtcagggacc gtagaccgta tggcacccct atggactttg gccaggtgtt taacatgttc 660 gacaacgagc ctagcaccgc cactgtgaaa aacgatctcc gtgatcgttt tcaagttatg 720 cacaagttct atgctaaggt cacaggtgga caatacgcaa gcaacgagca ggcgcttgtc 780 aagcggttct ggaaggtcaa caatcatgtc gtctataacc atcaagaagc cggaaagtac 840 gagaatcata cggagaacgc cctgttattg tatatggcat gtactcatgc ctcaaacccc 900 gtgtatgcaa ctttaaaaat tcggatctat ttttatgatt cgataacaaa ttaataaatt 960 ttgaatttta ttgaatgatt ctcgagtaca gcatttacat attgtttgtc tgtggcgaag 1020 cgtacagctc taattacatt attaactgaa ataacgccta gctgatcaat gtacaacata 1080 actaaatatt taaatctatt taaatatgtc atcccagaag ctctcaggga tgtcgtccag 1140 atttggaagt tgagataagc cttgtggaga cccagtactc tcctcaggtt gtggttgaac 1200 cgtatttgga cgtggtagac tctggtcctc gtgtatagta tgtcctcgac gttgtacatc 1260 ttgaaataaa ggggatttga tatttcccaa gtatacacgc cattctctgc ctgatgtgca 1320 gtgatgagtt cccctgtgcg tgaatccatg tcctgcgcaa tctatgtgta cgaaaatgga 1380 gcagccgcac tgtaaatcaa ttcgtcttct tcgtatagct ctcttcttag cagcccgatg 1440 ttgaactttg atagaggggg gagttgagga agatgaattg tgcattgtgc tttgtccaac 1500 tacttaatgc tgagttttca tccttgtcga ggaaacattt atagctggcc ccctcgccag 1560 gattgcagag cacgatgcat gggataccac ctttaatttg aactggcttt ccgtatttac 1620 agtttgattg ccaatccttt tgggccccaa tcaattcttt ccagtgcttt aactttagat 1680 agtgcggtgc gacatcatca atgacgttat actgcacatc gtttgagtag acctttgaat 1740 tgaaatcgag gtgaccactc aagtaattat gggaccctaa tgcacgtgac cacatcgttt 1800 tgccacttcg agaatcaccc tcgattatta tactgatagg tctctccggc cgcgcagcgg 1860 catctctccc gaaatagtca tctgcccaat cttgcatctc gacaggcacg ttagtgaacg 1920 acgagagtgg aaacggagga acccaaggtt ctggagcctt tgcgaaaata cgctctaaat 1980 ttgacctaat gttatgatgt tgaagcacga aatctttggg ttgttcctcc cttaatatat 2040 tgagtgcttc catgacagat cctgcgttga gaaccttggc gtacgtgtcg ttggcagatt 2100 gctgacctcc tctagttgat ctgccatcga tctggaaaac tccatgatca acgaagtctc 2160 cgtctttttc cacgtatgat ttgacatctg acgagctcga gctcttagct ccctgtatgt 2220 ttggatggaa atgtgctgac ctacttgggg agacgaggtc gaagaacttg ttatttttgc 2280 agttgtattt tccttcgaat tggatgagca cgtggagatg aggttgccca tcttcgtgta 2340 gttctctcga gacacgaatg aataatttat tagttggtgt gtttagggct aataattggg 2400 aaagtgcttc ttctttggaa agataacagt gtggatatgt cagaaaataa tttttggaat 2460 ttactcggaa atgtctgggc ggtggcatat ttgtaataat agttgggcac cgattgggga 2520 ctctctaaac ttgctctagc aattggggac tggggtccta tatatactag aaccctctat 2580 agaactttca atctcgttca cacacgtggc ggccatccta tataatatt 2629 //