ID   KC441465; SV 1; circular; genomic DNA; STD; VRL; 2638 BP.
XX
AC   KC441465;
XX
DT   15-APR-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 4)
XX
DE   Squash leaf curl virus isolate PAL segment DNA-A AV1, AC3, AC2, AC1, and
DE   AC4 genes, complete cds.
XX
KW   .
XX
OS   Squash leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2638
RX   DOI; 10.1007/s11262-013-1012-1.
RX   PUBMED; 24258392.
RA   Ali-Shtayeh M.S., Jamous R.M., Hussein E.Y., Mallah O.B., Abu-Zeitoun S.Y.;
RT   "Squash leaf curl virus (SLCV): a serious disease threatening cucurbits
RT   production in Palestine";
RL   Virus Genes 48(2):320-328(2014).
XX
RN   [2]
RP   1-2638
RA   Ali-Shtayeh M.S., Jamous R.M.;
RT   ;
RL   Submitted (05-JAN-2013) to the INSDC.
RL   Biodiversity and Biotechnology research Unit, Biodiversity & Environmental
RL   Research Center, BERC, Al-Masjed Str, Nablus 970, Palestinian Authority
XX
DR   MD5; 1f91bf8fd92d99e55dde3148d71c98b4.
XX
CC   GenBank Accession Numbers KC441465, KC441466 represent sequences
CC   from the 2 segments of Squash leaf curl virus isolate PAL.
CC   ##Assembly-Data-START##
CC   Assembly Method       :: CLC Main Workbench 6 v. 6.6.2
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2638
FT                   /organism="Squash leaf curl virus"
FT                   /segment="DNA-A"
FT                   /host="squash"
FT                   /isolate="PAL"
FT                   /mol_type="genomic DNA"
FT                   /collection_date="Sep-2010"
FT                   /note="Palestine"
FT                   /db_xref="taxon:10829"
FT   CDS             213..968
FT                   /codon_start=1
FT                   /product="AV1"
FT                   /db_xref="GOA:M9T6X2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:M9T6X2"
FT                   /protein_id="AGI96968.1"
FT                   /translation="MVKRDAPWRLMAGTSKVSRSANFSPRGGMGPRFNKAAAWVNRPMY
FT                   RKPRIYRTMRGPDIPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATI
FT                   KNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(965..1369)
FT                   /codon_start=1
FT                   /product="AC3"
FT                   /db_xref="GOA:M9T548"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:M9T548"
FT                   /protein_id="AGI96969.1"
FT                   /translation="MVMDLRTWDDITVHQAENSVFIWEVPNPLYFKMYNVENPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAFLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLGVIGL
FT                   NNVIRAVSWATDRSYVNYVLENHEIKFNIY"
FT   CDS             complement(1110..1505)
FT                   /codon_start=1
FT                   /product="AC2"
FT                   /db_xref="GOA:M9T136"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:M9T136"
FT                   /protein_id="AGI96970.1"
FT                   /translation="MPNSSSSKVPSIKAQHRIAKKRAVRRRRIDLDCGCSIYIHINCAK
FT                   DGNGFTHMGRHHCASGREFRFYLGGSKSPLFQDVQRGESTLHAHKDIPHSNPVQPQPEE
FT                   STKSSQSVPELPSLDGIDSSFWDDIFE"
FT   CDS             complement(1447..2493)
FT                   /codon_start=1
FT                   /product="AC1"
FT                   /db_xref="GOA:M9T1P1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:M9T1P1"
FT                   /protein_id="AGI96971.1"
FT                   /translation="MPRNPNSFRLTARNIFLTYPRCDVPKEEVLEMLLHLSWSVVKPNY
FT                   IRVAREEHSDGSPHLHCLIQLSGKSNIKDAGFFDLTHPRRSARFHPNIQAAKDTNAVKN
FT                   YITKEGDYCESGQYKVSGGSKSTKDDVFPNAVNAGSAGEALEIIKAGDPKTFIVNYHNL
FT                   LANVERLFQKPPEPWVPPFEISSFTSVPEELQYWADDYFNECSAARPRPTSIIIEGGSR
FT                   TGKTMWARSLGPHNYLSGHLDFNSRVFSNDVKYNVIDDVAPHYLKLKHWKELIGAQRDW
FT                   QSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENSALREWTEKNAKFIFLEGPL
FT                   YQSTAQDC"
FT   CDS             complement(2049..2426)
FT                   /codon_start=1
FT                   /product="AC4"
FT                   /db_xref="UniProtKB/TrEMBL:M9SZA4"
FT                   /protein_id="AGI96972.1"
FT                   /translation="MFPKKKFLRCFCISRGQSSNRITLESPERNIPTGLRTYTASFNYL
FT                   ENPTSRMLDFSTSLTPDGLPDFTRTFRLPKTPTPSRTTSPKKVIIVNPGNIKCLGVQSR
FT                   PKTTYFPTPSMQVVREKLSKL"
XX
SQ   Sequence 2638 BP; 706 A; 578 C; 600 G; 754 T; 0 other;
     accggatggc cgcccgtttt tggtgtcctc tactttagcc cacggggcag gcccaggccc        60
     aaatcaacca caaccttttt ttattttatg ggaccacatt aattattgca accaatcacg       120
     ttgcgcctga cgagtctaca taataatgac ttggtgacta agtgtggtcc ctataaataa       180
     agctgacata tcccatacct ctttaattca aaatggtaaa gagagatgcc ccatggcgtt       240
     taatggcggg gacctcaaag gtctcacgct ctgctaactt ttcgcctcgt ggaggtatgg       300
     gcccaagatt caacaaggcc gctgcatggg ttaacaggcc tatgtacagg aagcccagga       360
     tctatcgcac aatgagaggc ccagacatcc ccaagggatg tgaagggcca tgcaaggttc       420
     agtcttacga gcagcggcat gatatctccc atcttggcaa ggtaatgtgt atttcggacg       480
     tgacgcgtgg taatggcatt actcaccgcg tcggcaagcg cttttgtgtt aagtctgtat       540
     atattttagg caagatatgg atggacgaaa atatcaagtt gaagaatcac acgaacagtg       600
     tgatattttg gttagttcga gatcgtagac catatggcac tccgatggat ttcggccagg       660
     tgttcaacat gtttgacaac gagcccagca cggcaactat caagaacgat ctacgtgatc       720
     gttatcaagt catgcacagg ttctacgcga aggtcactgg tggtcagtat gctagcaacg       780
     aacaagcctt ggttaggcgt ttctggaagg tcaacaacca tgttgtgtat aatcaccagg       840
     aagccgcgaa atacgagaat catacggaga acgctttgtt attgtatatg gcatgtactc       900
     atgcctctaa ccctgtatat gcgacattga aaattcggat ctatttttat gattcgataa       960
     caaattaata aatgttgaat tttatttcat gattctcgag tacataattt acatatgaac      1020
     ggtctgttgc ccaagataca gctcgtataa cgttattgag accaataact cctaacctat      1080
     ctaagtacaa cataactaag tgcctaaatc tattcaaata tgtcgtccca gaagctcgaa      1140
     tcgattccgt ccagacttgg aagttcagga acgctttgtg aagatttagt gctctcctca      1200
     ggttgtggtt gaaccggatt tgaatgtggt atatccttgt gtgcgtgtag agtggattct      1260
     ccacgttgta catcttgaaa tagaggggat ttggaacctc ccaaataaaa acggaattct      1320
     ctgcctgatg cacagtgatg tcgtcccatg tgcgtaaatc cattaccatc tttggcgcag      1380
     tttatatgta tgtatatgga acagccacag tctaagtcga ttcttcgacg acgaacagct      1440
     ctttttttag caatcctgtg ctgtgctttg atagagggga ccttcgagga agatgaattt      1500
     ggcatttttt tcagtccact ctcgtagtgc cgagttctcg gctttgtcga ggaaatcttt      1560
     ataactggac ccctctccag gattgcacag cacgattgat gggattccac ctttaatttg      1620
     aaccggcttt ccatatttac agttggactg ccagtccctt tgggccccaa tcaattcctt      1680
     ccagtgcttt agctttaggt aatgcggagc gacgtcatca atgacgttat acttgacgtc      1740
     atttgagaaa accctagaat tgaaatcaag atggccgctc aagtaattat gtgggcctaa      1800
     tgacctagcc cacattgtct tgcccgttct tgaaccacct tctatgatta tactagttgg      1860
     ccttggccgc gcagcggaac actcattaaa ataatcatca gcccaatatt gtaactcttc      1920
     tggaactgac gtgaacgaag agatctcaaa cggaggaacc catggttccg gaggtttctg      1980
     aaataatctc tcgacgttag ctaataaatt atgataatta acgataaacg tctttggatc      2040
     accagctttt ataatttcga gagcttctcc cgcactacct gcattgacgg cgttgggaaa      2100
     tacgtcgtct ttggtcgact ttgaaccccc agacacttta tattgcccgg attcacaata      2160
     atcaccttct ttggtgatgt agttcttgac ggcgttggtg tctttggcag cctgaatgtt      2220
     cgggtgaaat cgggcagacc gtctggggtg agtgaggtcg aaaaatccag catccttgat      2280
     gttggatttt ccagataatt gaatgaggca gtgtaagtgc ggagacccgt cggaatgttc      2340
     ctctctggcg actctaatgt aattcggttt gacgactgac cacgagagat gcagaagcat      2400
     ctcaagaact tcttctttgg gaacatcgca ccttggataa gttaagaata tatttctggc      2460
     agttaaacga aaggaattag ggtttcgtgg catatttcgt aaatatggat cgggacacca      2520
     ggaggtgtcc tctcaacttt ctcatattgc tggtgtcctg gtgtcctata tatacctcaa      2580
     gacacataaa gcctctaggg gacaccaagg ggcaaaatcg gccatccgca ataatatt        2638
//