ID JX871377; SV 1; circular; genomic DNA; STD; VRL; 2662 BP. XX AC JX871377; XX DT 04-FEB-2013 (Rel. 115, Created) DT 04-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Sida mottle virus isolate BR:Vic10:10 segment DNA-A, complete sequence. XX KW . XX OS Sida mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2662 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT "Further molecular characterization of weed-associated begomoviruses in RT Brazil with an emphasis on Sida spp."; RL Unpublished. XX RN [2] RP 1-2662 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT ; RL Submitted (26-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 4a91be36bd2ff29dd5f3beb45d756469. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman6.0 v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2662 FT /organism="Sida mottle virus" FT /segment="DNA-A" FT /host="Sida santaremensis" FT /isolate="BR:Vic10:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2010" FT /db_xref="taxon:191460" FT CDS 255..1007 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:L7YFH7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:L7YFH7" FT /protein_id="AGD98587.1" FT /translation="MPKRDPSWRQMAGTSKVSRSSNFSPRGGGGPKPTRAFEWVNRPMY FT RKPRIYRTIRTPDVPRGCEGPCKESYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFC FT VKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVK FT NDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALL FT LYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1004..1402) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:L7YD92" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L7YD92" FT /protein_id="AGD98588.1" FT /translation="MDSRTGELITVPQAENGVYIWEITNPLYFKIYHVEDLLYTTTRVY FT HVQIRFNHNLRRVLGLHKAFLNFQVWTTSLTASGTTYLIRFRRLVMMYLDQLGVITLNN FT VLRAVYFATDRSYVRYVLENHEIKFKIY" FT CDS complement(1149..1538) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:L7Y819" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L7Y819" FT /protein_id="AGD98589.1" FT /translation="MLNSSSSTPPSIKPRHRAAKKRTTRRRRIDLACGCSIYVHISCSN FT NGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGPVVHDDQSVPRTNTVQPQPQESI FT GSPQGIPELPSLDDISDSFWNDLFD" FT CDS complement(1459..2538) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:L7YE18" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L7YE18" FT /protein_id="AGD98590.1" FT /translation="MPSKPRRFRVQAKNIFLTYPQCPLTKEEALSQLQAIQLPSNKKFI FT KICRELHEDGQPHLHILLQLEGKSPVTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKSY FT IDKDGDTVEWGEFQVDGRSSRGGQQTANDVAAEALNAPDKHTALQIIREKLPEKYLFQF FT HNLNSNLDRIFLKAPEPWTPPFSLSSFTNVPVEMQEWADDYFGRGSAARPLRPMSLIVQ FT GDSRTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKLKHWKELIGA FT QKDWQSNCKYGKPVQIKGGVPSIVLCNPGEGVSYKEFLDKEENAGLKSWTLHNAKFIFL FT DSPLYQTTTQGGEEENNSP" FT CDS complement(2121..2378) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L7YC86" FT /protein_id="AGD98591.1" FT /translation="MGNLTSTSCCNWKERVQSQITDCSTWYPQLGQHISIRTYRELSRA FT PTSSHTSTRTEIQWNGGSSRSTEEVQGEDNRQLMTLQLRR" XX SQ Sequence 2662 BP; 665 A; 620 C; 622 G; 755 T; 0 other; accggatggc cgcgcgattt tccccccccc ctcacgtggc gctctggtgg ccgctcgatc 60 cccttctccc ccgctcccgt ggtggccctc ttgctcgcgc gatgttctcc tttaatttga 120 attaaaggat ttaactttcg tctgaccaat tatattgcgc ctgaggagct tagataactg 180 tgttaagact tggtccctaa gttttatggc ccctataaaa ctaaagcaag catgacgtca 240 gtctttaatt ctaaatgcct aagcgggatc cctcatggcg ccagatggcg ggaacctcaa 300 aggtaagccg ctcttctaat ttctcacctc gtggaggtgg cggcccaaaa cccacaaggg 360 cctttgaatg ggttaacagg cctatgtaca ggaagcccag gatatatcgg actatccgaa 420 cgcctgatgt tcctagaggc tgtgaagggc cctgtaagga atcatacgag caacgtcacg 480 atatctccca cgtcggcaag gtcatgtgta tatctgatgt cacacgtggt aacggtataa 540 ctcaccgtgt cggtaagcgt ttctgcgtta agtctgtgta tattttaggc aagatatgga 600 tggacgagaa catcaagctc aagaaccaca cgaacagtgt catgttctgg ttggtcagag 660 accgtagacc gtatggcaca cctatggact ttggccaggt gttcaacatg tttgacaacg 720 agcccagcac tgctacggtg aagaacgatc tccgtgatcg ttatcaagtt atgcacaagt 780 tctacgccaa ggtcacgggt ggtcaatatg ccagcaatga acaggcgctg gtcaagaggt 840 tctggaaggt caacaatcat gtggtgtaca accaccagga agctggcaag tatgagaatc 900 acacggagaa cgcattgcta ctttacatgg catgtactca tgcctctaac cctgtgtatg 960 caacgctcaa gattcggatc tacttctacg attcgataac taattaataa attttgaatt 1020 ttatttcatg attttccagt acatatctga catatgatct gtcagtcgca aaataaacag 1080 ccctaagtac attattaagc gtaatgacgc ctaattggtc taaatacatc atgactaacc 1140 gtctaaacct aatcaaataa gtcgttccag aagctgtcag agatgtcgtc cagacttgga 1200 agttcaggaa tgccttgtgg agacccaata ctctcctgag gttgtggttg aaccgtattt 1260 gtacgtggta cactctggtc gtcgtgtaca acaggtcctc tacgtggtat atcttgaaat 1320 acaggggatt tgttatctcc cagatataga cgccattctc tgcttgaggc acagtgatga 1380 gttccccggt gcgtgaatcc attgttgctg cagctgatgt ggacgtatat ggagcacccg 1440 cacgctagat caatccttct acggcgagtt gttctcttct tcgccgccct gtgtcgtggt 1500 ttgatagagg ggggagtcga ggaagatgaa tttagcattg tggagtgtcc acgactttag 1560 acctgcattc tcttctttgt cgaggaactc tttataactg actccctccc caggattgca 1620 gagcacgatt gatggtaccc cacctttaat ttgaactggc tttccgtatt tgcaatttga 1680 ctgccagtct ttttgagcac caatcaattc tttccagtgc tttaacttta gatattgggg 1740 tgtgacatca tcaatgacgt tatactccac ttcgtttgaa tagaccttag aattgaagtc 1800 cagatgacca ctcaagtaat tatgtgggcc taacgcacga gcccacatcg tcttccctgt 1860 tcttgaatca ccttggacta tcaaactcat aggtctcaat ggccgcgcag cggaacccct 1920 cccaaaataa tcgtccgccc actcttgcat ctcgacggga acgttagtga aggaggaaag 1980 tgaaaacggc ggagtccatg gctccggagc ctttaagaaa atcctatcta aattagaatt 2040 tagattgtga aactgaaaaa gatatttctc aggcaatttc tccctaatga tttggagagc 2100 cgtgtgttta tccggagcat ttaacgcctc agctgcaacg tcattagctg tctgttgtcc 2160 tccccttgaa cttcttccgt cgacctggaa ctccccccat tccactgtat ctccgtcctt 2220 gtcgatgtat gacttgacgt cggagctcga cttagctccc tgtatgttcg gatggaaatg 2280 tgctgaccta gttggggata ccaggtcgaa cagtcggtta tttgtgactg gactctttcc 2340 ttccaattgc aacaagatgt ggaggtgagg ttgcccatct tcatgaagct ctctgcagat 2400 tttgatgaat ttcttattgg agggtaattg aatagcttgc aattgggaaa gtgcctcctc 2460 ttttgtaaga gggcactgtg gatatgtaag gaaaatgttt ttagcctgca ctctaaaacg 2520 acgtggtttg gatggcattt ttgtaaataa ggctgtgtac tccggatgag agctcgctca 2580 taagtctcta tgaattggag tatggagtac aatatatagt aggagttcct aaggggcacg 2640 tggcggccat ccgtataata tt 2662 //