ID   JX871372; SV 1; circular; genomic DNA; STD; VRL; 2643 BP.
XX
AC   JX871372;
XX
DT   04-FEB-2013 (Rel. 115, Created)
DT   04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida common mosaic virus isolate BR:Vic5:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Sida common mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2643
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   "Further molecular characterization of weed-associated begomoviruses in
RT   Brazil with an emphasis on Sida spp.";
RL   Unpublished.
XX
RN   [2]
RP   1-2643
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   ;
RL   Submitted (26-SEP-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
DR   MD5; 03f65f8b7151ed3d2ac7d4d7c84d8889.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman6.0 v. 6.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2643
FT                   /organism="Sida common mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Sida micrantha"
FT                   /isolate="BR:Vic5:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:536082"
FT   CDS             228..977
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7YFF9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:L7YFF9"
FT                   /protein_id="AGD98562.1"
FT                   /translation="MPKRDPSWRSMAGTSKVSRSSNFSPRGGPKINKASEWVNRPMYRK
FT                   PRIYRALKTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCV
FT                   KSVYIIGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN
FT                   DLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLL
FT                   YMACTHASNPVYATLKIRIYFYDSVSN"
FT   CDS             complement(974..1372)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:L7YD74"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L7YD74"
FT                   /protein_id="AGD98563.1"
FT                   /translation="MDSRTGEFITAPQAENGVYIWEITNPLYFKIYHVEDILFTGTRVY
FT                   HIQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMLYLDQLGVISINN
FT                   VIRAVRFATNRPYVNHVLEKHSIKFKIY"
FT   CDS             complement(1119..1508)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:L7Y801"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L7Y801"
FT                   /protein_id="AGD98564.1"
FT                   /translation="MLSSSPSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHS
FT                   HGFTHRGVHYCSSSREWRVYLGDNKSPIFQDLPCRRHPVHRDQSVSHPDTVQPQPQESV
FT                   GSPQGIPELPSLDDISEGFWDDIFT"
FT   CDS             complement(1429..2508)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:L7YDZ9"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L7YDZ9"
FT                   /protein_id="AGD98565.1"
FT                   /translation="MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIK
FT                   VARELHEDGQPHLHVLVQFEGKFNCTNSRLFDLVSQSRSTHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTVEWGTFQIDGRSARGGQQTANDAAAEALNAGTKEEAMMIIKEKMPEKFLFQYH
FT                   NLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPMSIIIE
FT                   GDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEVDYNVIDDVPPHYLKLKHWKELIGA
FT                   QKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKMFLDKEENSGLKNWTIHNAIFVTL
FT                   TAPLYQGSAQSGEEEGNSP"
FT   CDS             complement(2094..2351)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L7YC69"
FT                   /protein_id="AGD98566.1"
FT                   /translation="MGSHISTFSFSSKGSSTAQIADCSTWYPNPGQHISIRTYRVLNPA
FT                   PTSSPTSRKTVIQSNGGRSRSTEEVLEEASKRLTTQPPKR"
XX
SQ   Sequence 2643 BP; 667 A; 594 C; 629 G; 753 T; 0 other;
     accggatggc cgcgcgattt tttgcccccc tacgtggcgc tatggtggcc gctcgatctc        60
     tctctcctgc gcgttgtact cctttaattc taattaaagg gctaacttta gtttggacca       120
     atgatagtgc gcctgggaag cctagatatc tgcgcgagac ttggggccga agttgttgat       180
     caacggctat aaattaaagg aagactgatc acagtctttt attcaaaatg cctaagcggg       240
     atccctcatg gcgttcgatg gcgggaacct caaaggtaag ccgctcctcc aatttctctc       300
     ctcgtggagg cccaaagatt aacaaggcct ctgaatgggt aaacaggccc atgtacagga       360
     agcccaggat atacagggcg ctgaaaactc ctgatgttcc tagaggctgt gaagggcctt       420
     gtaaggtcca gtcttacgag caacgtcacg atatctccca tgtggggaag gttatgtgta       480
     tatctgatgt gacacgaggt aacggtatta ctcaccgtgt cggtaagcgt ttttgtgtta       540
     agtctgtgta tattataggt aaggtatgga tggacgagaa catcaagctc aagaaccaca       600
     cgaacagttg tatgttctgg ttggtcaggg accgtagacc gtatggtaca ccgatggact       660
     ttggccaagt tttcaacatg ttcgacaacg agcccagtac tgcaacagta aagaacgatc       720
     tccgtgatcg ttatcaagtc atgcacaagt tctacgccaa ggtcactggt ggtcaatatg       780
     ccagcaatga acaggctctg gtcaagaggt tctggaaggt caacaatcat gtggtgtaca       840
     atcaccagga ggcagggaaa tacgagaacc acactgaaaa cgctctgtta ttgtatatgg       900
     catgtacaca tgcctctaat cctgtgtatg cgacccttaa aatccggatc tatttttatg       960
     attcggtttc aaattaataa attttgaatt ttattgaatg cttctccagt acatgattta      1020
     cataaggcct gttcgtcgcg aaacgaacag ctctaataac attatttatt gagattacac      1080
     ctaattgatc taaatacaac atgactaaat gtctaaatct atgtaaatat gtcatcccag      1140
     aagccttcac tgatgtcgtc cagacttgga agttcaggaa tgccttgtgg agacccaacg      1200
     ctctcctgag gttgtggttg aaccgtatct ggatgtgata cactctggtc cctgtgaaca      1260
     ggatgtcttc tacatggtag atcttgaaat ataggggatt tgttatctcc cagatataca      1320
     cgccattctc tgcttgagga gcagtaatga actcccctgt gcgtgaatcc atggctgtgg      1380
     cagttgatgt ggacgtatat ggagcagccg caatttaggt cgatccttct acggcgagtt      1440
     gccctcttct tcgccgctct gtgctgaacc ttgatagaga ggggctgtga gggtgacgaa      1500
     gatagcatta tggatggtcc agttctttag acctgagttt tcctctttgt cgaggaacat      1560
     tttatagctg gaaccctcac ctggattgca gagcacgatt gatgggatac cacctttaat      1620
     ttgaactggc ttgccgtatt tacaatttga ttgccagtcc ttttgggccc caatcaactc      1680
     tttccagtgc tttagcttta ggtaatgcgg agggacgtca tcaatgacgt tataatcaac      1740
     ttcgttcgag taaaccctgg aattgaaatc caggtgtcca ctaagataat tatgggcccc      1800
     taaagctcta gcccacatcg tcttccccgt ccgactatca ccttcgatga tgatactcat      1860
     aggcctctct ggccgcgcag cggaaacgac aagcccaaaa tagtcatcag cccaagactg      1920
     catctcgtcc ggaacgttag tgaaagaaga gaggggaaac ggaggagtcc atggctctgg      1980
     agcctttttg aaaattctat ccaggttact ggataggtta tggtactgga agaggaactt      2040
     ttccggcatc ttttctttga taatcatcat cgcctcctcc tttgttccag cattcaacgc      2100
     ttcggcggct gcgtcgttag ccgtttgctg gcctcctcta gcacttcttc cgtcgatctg      2160
     gaacgtcccc cattcgactg tatcaccgtc tttctcgacg taggacttga cgtcggagct      2220
     ggatttagca ccctgtatgt tcggatggaa atgtgttgac ctggattggg ataccaagtc      2280
     gaacagtctg ctatttgtgc agttgaactt cccttcgaac tgaacgagaa cgtggagatg      2340
     tggctgccca tcttcgtgta gctctcttgc aaccttgatg aatttcttgt tgacaggcgt      2400
     ttggataacc ctaatttgtt cgagagcttc ctctttagga agagagcact gaggatatgt      2460
     aagaaaataa tttttagctt taatagagaa agaccccttt cgtggcattt ttgtaaatat      2520
     aggtatgtac ccccaattgc tctcgcctct aaaactctca tgaattgggg gaactggggg      2580
     aacttatata tgagaagttc ctaaggttag atctgacacg tggcggccat ccgctataat      2640
     att                                                                    2643
//