ID JX162593; SV 1; circular; genomic DNA; STD; VRL; 2542 BP. XX AC JX162593; XX DT 26-AUG-2012 (Rel. 113, Created) DT 26-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Sida golden yellow vein virus-[Jamaica:Liguanea2:2008] clone pBrB2, DE complete genome. XX KW . XX OS Sida golden yellow vein virus-[Jamaica:Liguanea2:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2542 RA Martin D.P.; RT "The molecular characterisation of a Sida-infecting begomovirus from RT Jamaica and possible evidence for its recombinant origin"; RL Unpublished. XX RN [2] RP 1-2542 RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.; RT ; RL Submitted (10-JUN-2012) to the INSDC. RL The Biotechnology Centre, The University of the West Indies, Mona Road, RL Mona, St. Andrew Kgn 7, Jamaica XX DR MD5; 57b8fea00f6bf69285ea83edc34a815e. XX FH Key Location/Qualifiers FH FT source 1..2542 FT /organism="Sida golden yellow vein FT virus-[Jamaica:Liguanea2:2008]" FT /host="Sida sp." FT /isolate="Jamaica:Liguanea2:2008" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2008" FT /clone="pBrB2" FT /db_xref="taxon:929766" FT misc_feature 14..2396 FT /note="IR; contains conserved sequences essential for viral FT replication" FT gene 374..1150 FT /gene="NSP" FT CDS 374..1150 FT /codon_start=1 FT /gene="NSP" FT /product="nuclear shuttle protein" FT /function="responsible for moving viral DNA out of the FT nucleus & into the cytoplasm" FT /db_xref="GOA:E5KBZ5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:E5KBZ5" FT /protein_id="AFP99143.1" FT /translation="MNMYPFRNKRGSSFTQRRYYPRNTVFNRLTASKRHDVKLRLGHMN FT KPTDEPKMSAQRIHENQYSPEFVMSQNSAISTFISYPNLGKTEPNRSRSYIKLKRLRFR FT GTVKIERVQSDVNMDGSVPKLEGVFSIVVVVDRKPHLGPTGSLHTFDELFGAMIHSHGN FT LSITPSLKDRFYIRHVFKRVISVDKDTTMFDVGGSTTLSNRRFNCWASFKDFDCDSSKG FT VYDNISKNALLVYYCWMSDTMSKASNFVSFELDYIG" FT gene complement(1186..2073) FT /gene="MP" FT CDS complement(1186..2073) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /function="responsible for moving virus from cell to cell FT via the plasmodesmata" FT /db_xref="GOA:J7HER2" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:J7HER2" FT /protein_id="AFP99144.1" FT /translation="MDSQLMNPPSAFNYIESHRDEYQLCHDLTEIVMQFPSTTAQLTAR FT LSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRTGLRGPIEIRPGESWASRSTIGTAQSDAD FT SETENELELHPYRHLSRLGTTVLDPGESASIVGAQRAESNITMTMGQLNELVRTTVHEC FT INSNCKASQPKSLQ" XX SQ Sequence 2542 BP; 643 A; 524 C; 550 G; 825 T; 0 other; accggatggc cgcgctttgg tggccccctg gtgccctctc acgcgccctc ctctggtgct 60 cgctttccac gcgctctctc attggcgtag gtgtctcacg ctcttttttg tgtttgtcct 120 ttaattcaaa ttaaaggtta attctttatc gcgcgatttg accatattgg tcgcgatgac 180 tgactatgtt cacttttacc tgttggtgga cgtggcttga ttttgtccat gtcgctgagc 240 ctatttgtgt ttaactattg acctggcttt tctatatatt tgagagaaat atgtattata 300 tgttaagtgg ctcagctgtg ccccacgttt atatttttat tcctaataat agtttagcca 360 ttattattac cgtatgaata tgtatccttt taggaataaa cgtgggtcct cattcactca 420 acgtcgttat tatccacgca atactgtgtt taaccgttta accgcctcta agagacatga 480 tgtgaaacta cgactgggtc atatgaacaa gcccactgac gagcccaaga tgtcagccca 540 acgcatacat gagaatcaat atagtccaga gtttgttatg tcacaaaact ccgccatatc 600 aacctttatc agctatccta atctgggtaa gacagaaccc aatcgaagca ggtcttatat 660 aaagttgaaa cgactccgtt tcagagggac tgtgaagatt gagcgtgttc aatcggatgt 720 gaatatggat ggttctgttc ctaaattaga aggagttttt tctatcgttg tagtcgtgga 780 tcgtaaaccc cacttgggtc cgactggtag tcttcataca ttcgacgaac tatttggtgc 840 aatgatccat agtcatggta atcttagcat aaccccgtct ctgaaagatc ggttctatat 900 tcgacacgtg ttcaaacgtg tgatatctgt tgataaggat acgacaatgt ttgacgtggg 960 agggtctact acgctctcta ataggcgatt caattgttgg gcatcgttta aggattttga 1020 ttgtgactca agcaagggtg tatatgacaa tatcagcaag aacgctctat tagtttatta 1080 ttgttggatg tcagatacta tgtctaaggc atcgaatttt gtatcgtttg aactcgatta 1140 tatcggatga ttaataaaat aacatttatt aattacaata gttttttatt gcaatgattt 1200 aggctgagaa gccttgcaat tactattaat acattcatgg accgttgtcc taactaactc 1260 gttcaactgt cccatagtca ttgttatatt ggattccgct ctctgggctc ccactatcga 1320 agcagactca cccgggtcca atacggttgt acccagcctg ctcagatgtc tatatggatg 1380 gagctcgagc tcattctctg tctccgagtc cgcatctgat tgggccgtac ctattgtact 1440 cctggaagcc catgattctc ctggtcttat ttcgattggg cctcgtagcc cagttctgga 1500 catggacgcg catctgatgg gcttcctttc ccatttccca tagtccacat gggaaaagtc 1560 cacatctttg tctgtgaact gtttggacag tatctttacc gtcggtgccc ggaaggggat 1620 atccactgag tgtttggctg tggacaattt cagcttccct ttgaatttgg cgaagtgtgt 1680 cctctgatga acatttgtat ctgaaactct gtaatagagt ttccatggaa ttgggtcttt 1740 gagtgagaag aaggaagctg agaaatagtg gagatctatg ttgcacctga tcggaaaagt 1800 ccatgacgcc tgtaatgact cattgtctgt cattcttttg tcatgtatct ccactatcac 1860 cgtcccggaa gcgttaatgg gtacctgttg cctgtactca attacacagt ggtcgatctt 1920 catacagctt ctgctaagtc tcgccgttaa ttgtgccgtc gtcgaaggga attgcataac 1980 tatctcagtt aagtcatggc atagctgata ttcatctcta tgtgactcta tatagttgaa 2040 ggcacttgga ggattcatta actgagagtc catctagaag ataaggccgc gcagcggcac 2100 tgaccaccga gactgaactg ataaagaaaa aactagggtt tcttcttttg aatagcttat 2160 gacgtctaac tgaggacgaa ttgacttcct gggtattgac gatgaatatc gttatgagaa 2220 acccagaaat ttgcagaaga aacgaggaac aattgttgaa cttgtccaga aattgctttt 2280 gttctttaga aagtggagaa atattatcag tcaagtgttg ggtataacat gttagatctg 2340 gcatatttat atacagactt ttttttttgt tgatttattt gcagttttct atcgatggca 2400 tttttgtaat aataaggggt caccgattga ggctctctca aacttgctct agcaattggg 2460 gaacggggtc tcatttatac aagaagcctc aatagaactc tcaatctcgt tcgcacacgt 2520 ggcggccatc cgctataata tt 2542 //