ID JX080220; SV 1; linear; genomic RNA; STD; VRL; 853 BP. XX AC JX080220; XX DT 21-NOV-2012 (Rel. 114, Created) DT 21-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Apple stem grooving virus isolate CO2a-V2 movement protein and polyprotein DE genes, partial cds. XX KW . XX OS Apple stem grooving virus OC Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; OC Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-853 RX DOI; 10.1007/s00239-012-9518-z. RX PUBMED; 23149596. RA Liebenberg A., Moury B., Sabath N., Hell R., Kappis A., Jarausch W., RA Wetzel T.; RT "Molecular evolution of the genomic RNA of apple stem grooving RT capillovirus"; RL J. Mol. Evol. 75(3-4):92-101(2012). XX RN [2] RP 1-853 RA Liebenberg A., Wetzel T., Moury B., Sabath N., Hell R., Kappis A., RA Jarausch W.; RT ; RL Submitted (15-MAY-2012) to the INSDC. RL RLP Agroscience, AlPlanta - Institute for Plant Research, Breitenweg 71, RL Neustadt an der Weinstrasse 67435, Germany XX DR MD5; e38e1b5f3e97936d1c82c89ab5ad8c1d. XX CC ##Assembly-Data-START## CC Assembly Method :: BioEdit Ver. 7.0.4; DNAStar Ver. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..853 FT /organism="Apple stem grooving virus" FT /host="Malus x domestica" FT /isolate="CO2a-V2" FT /mol_type="genomic RNA" FT /country="Canada" FT /collection_date="2009" FT /db_xref="taxon:28347" FT CDS 1..>853 FT /codon_start=1 FT /product="movement protein" FT /note="ORF2; variable area 2" FT /db_xref="GOA:K7PFY2" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:K7PFY2" FT /protein_id="AFM37528.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLDPERGHICSYLFRFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEIKMAI FT LDHKSPLFIEEGAPNVHIEKRMFRGDKIRRSRSISAKRGPNSKLQEKRGFRSLSARIER FT FGE" FT CDS <1..>853 FT /codon_start=2 FT /product="polyprotein" FT /note="ORF1; contains replicase; variable area 2" FT /db_xref="UniProtKB/TrEMBL:K7PFW3" FT /protein_id="AFM37529.1" FT /translation="WQSSTSTISSRRLNQLTSRSMQFPPQSCTKMQPSSNLMFSTVSRD FT LNRMSRCRLDQETDWCFQTSSSLTILKSTPLERKATNISICTMESSWLESKPCSQILGE FT WKGGSLYMTELVLTPREGTYAHICSGLNPIAATSDLDLSIVYQQQMRTWQKGSGSELIL FT TVHNMNRIQNYLLLILGLRTGVLIQPDSLKRRLVIQGGPHRRSVGVRHSNSTRKLKWPS FT WITNLHCLLRKVHQMCTLKRECSEVTRSGGHALFLLKGGQTQNYRKREDLGPSQLESKD FT LEK" XX SQ Sequence 853 BP; 261 A; 165 C; 204 G; 223 T; 0 other; atggcaatcg tcaacgtcaa ccatttcctc aaggaggttg aatcaactga cctcaagatc 60 gatgcaattt cctcctcaga gttgtacaaa gatgcaacct tcttcaaacc tgatgttctc 120 aactgtatca agagatttga atcgaatgtc aaggtgtcgt ctagatcagg agacggactg 180 gtgctttcag acttcaagct ccttgacgat actgaaatcg actccattag aaagaaaagc 240 aacaaatata agtatttgca ctatggagtc atcctggttg gaatcaaagc catgctccca 300 aattttaggg gaatggaagg gagggtcatt gtatatgacg gagcttgtct tgaccccgag 360 agagggcaca tatgctcata tttgttcagg tttgaatccg attgctgcta cttcggactt 420 agacctgagc attgtttatc aacaacagat gcgaacttgg caaaaaggtt caggttcaga 480 gttgattttg actgtccaca atatgaacag gatacagaat tatttgctct tgatattggg 540 gttgcgtaca ggtgtgttaa ttcagccaga ttccttgaaa cgaagactgg tgattcaggg 600 tgggcctcac aggcgatcag tgggtgtgag gcactcaaat tcaacgagga aattaaaatg 660 gccatcctgg atcacaaatc tccactgttt attgaggaag gtgcaccaaa tgtgcacatt 720 gaaaagagaa tgttcagagg tgacaagatc aggaggtcac gctctatttc tgctaaaagg 780 gggccaaact caaaactaca ggaaaagaga ggatttaggt ccctctcagc tagaatcgaa 840 agatttggag aaa 853 //