ID   JX080220; SV 1; linear; genomic RNA; STD; VRL; 853 BP.
XX
AC   JX080220;
XX
DT   21-NOV-2012 (Rel. 114, Created)
DT   21-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Apple stem grooving virus isolate CO2a-V2 movement protein and polyprotein
DE   genes, partial cds.
XX
KW   .
XX
OS   Apple stem grooving virus
OC   Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
OC   Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-853
RX   DOI; 10.1007/s00239-012-9518-z.
RX   PUBMED; 23149596.
RA   Liebenberg A., Moury B., Sabath N., Hell R., Kappis A., Jarausch W.,
RA   Wetzel T.;
RT   "Molecular evolution of the genomic RNA of apple stem grooving
RT   capillovirus";
RL   J. Mol. Evol. 75(3-4):92-101(2012).
XX
RN   [2]
RP   1-853
RA   Liebenberg A., Wetzel T., Moury B., Sabath N., Hell R., Kappis A.,
RA   Jarausch W.;
RT   ;
RL   Submitted (15-MAY-2012) to the INSDC.
RL   RLP Agroscience, AlPlanta - Institute for Plant Research, Breitenweg 71,
RL   Neustadt an der Weinstrasse 67435, Germany
XX
DR   MD5; e38e1b5f3e97936d1c82c89ab5ad8c1d.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: BioEdit Ver. 7.0.4; DNAStar Ver. 4.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..853
FT                   /organism="Apple stem grooving virus"
FT                   /host="Malus x domestica"
FT                   /isolate="CO2a-V2"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:28347"
FT   CDS             1..>853
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF2; variable area 2"
FT                   /db_xref="GOA:K7PFY2"
FT                   /db_xref="InterPro:IPR001815"
FT                   /db_xref="InterPro:IPR028919"
FT                   /db_xref="UniProtKB/TrEMBL:K7PFY2"
FT                   /protein_id="AFM37528.1"
FT                   /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR
FT                   FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG
FT                   MEGRVIVYDGACLDPERGHICSYLFRFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF
FT                   DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEIKMAI
FT                   LDHKSPLFIEEGAPNVHIEKRMFRGDKIRRSRSISAKRGPNSKLQEKRGFRSLSARIER
FT                   FGE"
FT   CDS             <1..>853
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /note="ORF1; contains replicase; variable area 2"
FT                   /db_xref="UniProtKB/TrEMBL:K7PFW3"
FT                   /protein_id="AFM37529.1"
FT                   /translation="WQSSTSTISSRRLNQLTSRSMQFPPQSCTKMQPSSNLMFSTVSRD
FT                   LNRMSRCRLDQETDWCFQTSSSLTILKSTPLERKATNISICTMESSWLESKPCSQILGE
FT                   WKGGSLYMTELVLTPREGTYAHICSGLNPIAATSDLDLSIVYQQQMRTWQKGSGSELIL
FT                   TVHNMNRIQNYLLLILGLRTGVLIQPDSLKRRLVIQGGPHRRSVGVRHSNSTRKLKWPS
FT                   WITNLHCLLRKVHQMCTLKRECSEVTRSGGHALFLLKGGQTQNYRKREDLGPSQLESKD
FT                   LEK"
XX
SQ   Sequence 853 BP; 261 A; 165 C; 204 G; 223 T; 0 other;
     atggcaatcg tcaacgtcaa ccatttcctc aaggaggttg aatcaactga cctcaagatc        60
     gatgcaattt cctcctcaga gttgtacaaa gatgcaacct tcttcaaacc tgatgttctc       120
     aactgtatca agagatttga atcgaatgtc aaggtgtcgt ctagatcagg agacggactg       180
     gtgctttcag acttcaagct ccttgacgat actgaaatcg actccattag aaagaaaagc       240
     aacaaatata agtatttgca ctatggagtc atcctggttg gaatcaaagc catgctccca       300
     aattttaggg gaatggaagg gagggtcatt gtatatgacg gagcttgtct tgaccccgag       360
     agagggcaca tatgctcata tttgttcagg tttgaatccg attgctgcta cttcggactt       420
     agacctgagc attgtttatc aacaacagat gcgaacttgg caaaaaggtt caggttcaga       480
     gttgattttg actgtccaca atatgaacag gatacagaat tatttgctct tgatattggg       540
     gttgcgtaca ggtgtgttaa ttcagccaga ttccttgaaa cgaagactgg tgattcaggg       600
     tgggcctcac aggcgatcag tgggtgtgag gcactcaaat tcaacgagga aattaaaatg       660
     gccatcctgg atcacaaatc tccactgttt attgaggaag gtgcaccaaa tgtgcacatt       720
     gaaaagagaa tgttcagagg tgacaagatc aggaggtcac gctctatttc tgctaaaagg       780
     gggccaaact caaaactaca ggaaaagaga ggatttaggt ccctctcagc tagaatcgaa       840
     agatttggag aaa                                                          853
//