ID   JX080219; SV 1; linear; genomic RNA; STD; VRL; 853 BP.
XX
AC   JX080219;
XX
DT   21-NOV-2012 (Rel. 114, Created)
DT   21-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Apple stem grooving virus isolate Aus-V2 movement protein and polyprotein
DE   genes, partial cds.
XX
KW   .
XX
OS   Apple stem grooving virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae;
OC   Capillovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-853
RX   DOI; 10.1007/s00239-012-9518-z.
RX   PUBMED; 23149596.
RA   Liebenberg A., Moury B., Sabath N., Hell R., Kappis A., Jarausch W.,
RA   Wetzel T.;
RT   "Molecular evolution of the genomic RNA of apple stem grooving
RT   capillovirus";
RL   J. Mol. Evol. 75(3-4):92-101(2012).
XX
RN   [2]
RP   1-853
RA   Liebenberg A., Wetzel T., Moury B., Sabath N., Hell R., Kappis A.,
RA   Jarausch W.;
RT   ;
RL   Submitted (15-MAY-2012) to the INSDC.
RL   RLP Agroscience, AlPlanta - Institute for Plant Research, Breitenweg 71,
RL   Neustadt an der Weinstrasse 67435, Germany
XX
DR   MD5; f3708811c60587567a0a9929e173f835.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: BioEdit Ver. 7.0.4; DNAStar Ver. 4.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..853
FT                   /organism="Apple stem grooving virus"
FT                   /host="Malus x domestica"
FT                   /isolate="Aus-V2"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:28347"
FT   CDS             1..>853
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF2; variable area 2"
FT                   /db_xref="GOA:K7PFX2"
FT                   /db_xref="InterPro:IPR001815"
FT                   /db_xref="InterPro:IPR028919"
FT                   /db_xref="UniProtKB/TrEMBL:K7PFX2"
FT                   /protein_id="AFM37526.1"
FT                   /translation="MAIVNVSHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR
FT                   FESNIKVSSRSGDGLVLSDFKLLDDTEIDSIRKRSNKYKYLHYGVILVGIKAMLPNFRG
FT                   MEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDVNLAKRFRFRVDF
FT                   DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEIKMAI
FT                   LDHKSPLFLEEGAPNVHIKKRMFRGDKVRRSRSISAKRGPNSELQGKRGFRSLSARIER
FT                   FGK"
FT   CDS             <1..>853
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /note="ORF1; contains replicase; variable area 2"
FT                   /db_xref="UniProtKB/TrEMBL:K7PFZ1"
FT                   /protein_id="AFM37527.1"
FT                   /translation="WQSSMSAISSRKSSQQISKSTQFHPQSFTKMQPFLNLTFSIASKD
FT                   LSQISRSPPDPVTASSCQTSNSLTTLRLIQSGKGATSTSTCTMGSSWLESKRCCQISGA
FT                   WRGESLFTMEPAWIQKEVTYVRTSSSLNLIAAILVSDLSTACPPLMSTWQKDLGSVWIL
FT                   IVRSMSRTLSCSLLILVWLTDALIQPDSWKPKLETQGGLHKPLVAVKHLSSMKRSKWQF
FT                   WTTSLHCSWKKVHQTCTLKKGCSEVTKLEGHALFLPKGGQIQNCREREDLGPSQLELKD
FT                   LEK"
XX
SQ   Sequence 853 BP; 250 A; 176 C; 202 G; 225 T; 0 other;
     atggcaatcg tcaatgtcag ccatttcctc aaggaagtcg agtcaacaga tctcaaaatc        60
     gacgcaattt catcctcaga gctttacaaa gatgcaacct tttttaaacc tgacgttctc       120
     aattgcatca aaagatttga gtcaaatatc aaggtctcct ccagatccgg tgacggcctc       180
     gtcttgtcag acttcaaact ccttgacgac actgagattg attcaatcag gaaaaggagc       240
     aacaagtaca agtacttgca ctatggggtc atcctggttg gaatcaaagc gatgttgcca       300
     aatttcaggg gcatggaggg gagagtcatt gtttacgatg gagcctgcct ggatccagaa       360
     agaggtcaca tatgttcgta cctcttcaag tttgaatctg attgctgcta ttttggtctc       420
     agacctgagc actgcctgtc caccactgat gtcaacttgg caaaaagatt taggttccgt       480
     gtggattttg attgtccgca gtatgagcag gacactgagc tgttcgctct tgatattggt       540
     gtggcttaca gatgcgttaa ttcagcccga ttcttggaaa ccaaaactgg agactcaggg       600
     tgggcttcac aagccattag tggctgtgaa gcacttaagt tcaatgaaga gatcaaaatg       660
     gcaattctgg accacaagtc tccattgttc ttggaagaag gtgcaccaaa cgtgcacatt       720
     aaaaaaagga tgttcagagg tgacaaagtt agaaggtcac gctctatttc tgccaaaagg       780
     gggccaaatt cagaattgca gggaaagaga ggatttaggt ccctctcagc tagaattgaa       840
     agatttggaa aaa                                                          853
//