ID JN997472; SV 1; linear; genomic RNA; STD; VRL; 4655 BP. XX AC JN997472; XX DT 11-APR-2012 (Rel. 112, Created) DT 02-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and DE RNA-dependent RNA polymerase (RdRp) genes, complete cds. XX KW . XX OS Xanthophyllomyces dendrorhous virus L1A OC Viruses; Riboviria; Totiviridae; Totivirus. XX RN [1] RC Publication Status: Online-Only RP 1-4655 RX PUBMED; 22838956. RA Baeza M., Bravo N., Sanhueza M., Flores O., Villarreal P., Cifuentes V.; RT "Molecular characterization of totiviruses in Xanthophyllomyces RT dendrorhous"; RL Virol J 9(1):140-140(2012). XX RN [2] RP 1-4655 RA Baeza M., Bravo N., Sanhueza M., Flores O., Villarreal P., Cifuentes V.; RT ; RL Submitted (04-NOV-2011) to the INSDC. RL Ciencias Ecologicas, Universidad de chile, Las Palmeras 3425, Nunoa, RL Santiago, Metropolitana 123131231, Chile XX DR MD5; 73a3e182570cf558472b290b77416a67. DR EuropePMC; PMC3561658; 22838956. XX FH Key Location/Qualifiers FH FT source 1..4655 FT /organism="Xanthophyllomyces dendrorhous virus L1A" FT /host="Xanthophyllomyces dendrorhous" FT /mol_type="genomic RNA" FT /note="acronym: XdV-L1A" FT /db_xref="taxon:1167690" FT gene 32..2077 FT /gene="CP" FT CDS 32..2077 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /note="XdVL1Agp1" FT /db_xref="InterPro:IPR015302" FT /db_xref="InterPro:IPR036332" FT /db_xref="UniProtKB/TrEMBL:H9XW59" FT /protein_id="AFH09411.1" FT /translation="MHTKFIESIVKTDYEGSFQPLFKDGRFTLINKQTAMVDMLGRQYD FT VNSELASNFNVCGKKPEVLHNVGEADFSGLNRKYFDDTNTYSPLAAINEFTKFVPGVRL FT TKGEVDAFAKSQIYEDSQEAYILNMLISWFKALLYEDTNSKDNVLHVKQSGYQDSHVKA FT EYGGVTGDVVHEINMGPPVDDMPEVMMMVRSKDNYWDRPYVLRFDNRSSAQYTFYITHC FT FGRDGTSPLNVDIHIPSVDFDQMLFEPASGAMRSITDPAALPWCKSGTLFGWIKDYVTL FT NRVERAFSAAFETLTAIAFTPMPSYQESLVWDKAITQVVIAKFAPCRAKIPSNLEGEAM FT VTDMDAHDFVLDETKTPRKALFSGAMINYLAFMGLHAILSNYASRHENWRSAFLHSHEE FT LAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSL FT PVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGH FT ELEIRSEKTEEIHELFAPVQECVIYPSALLYNTRDTDRLKLVSSLRRPGRSSTIPDVSA FT LTAGQTITIDYTIPRIGMHYFNKRVLPIAPSMVLPQRKREITFRVKGHTVLHKVKMNAS FT NVTRPVKDFHGGEIQVAPLLPVLRNARVPIQVNQTSEEDVTAEDVE" FT gene 2311..4596 FT /gene="RdRp" FT CDS 2311..4596 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="XdVL1Agp2" FT /db_xref="GOA:H9XW60" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:H9XW60" FT /protein_id="AFH09412.1" FT /translation="MDRESSNKFGIFEASKSVYGVTMSGLVIANGKAKFFFASIKQYLL FT TQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKI FT SGAHHFHFTPMQVLKSIGRGRLERAIQASRLPKDAEMTFATGMLLWYTSISDQMAELIR FT GAGIFKCDSVREYVKEMKQLSVEAKSLQNLVTDDLRTVFELEVLVNRIDGVVDWEKEKE FT NRQSVNVTNIKDSDVFRSACKIFEDAKGIGRRPKSFSWESYWANRWQWSAAGSIHSQYP FT RDMEYVIRDQQSLKNKFITISNMPKCTVDYFSDREPQVQGWSSTKYEWGKQRAIYGTDL FT TSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSS FT GNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQIINDNVGTKTTYESKGTLLSGWR FT LTTFMNSVLNYIYTTKLAAEEKRPGDSLHNGDDVLIGVRSMALPQRCMQNAIKYNVRMQ FT SSKCAVGAIAEFLRIDHKQGGNGQYLSRAVATMVHSRIESRVSTDIRDLVQSMENRFAD FT AKGRGMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLIT FT SQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKIL FT RENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVLGREMPDATITTILNTSQRP FT LDLIKHIL" XX SQ Sequence 4655 BP; 1498 A; 956 C; 1125 G; 1076 T; 0 other; gaaaattttt caaacacaga gattccccgt aatgcacact aaattcattg aaagtattgt 60 taagacagac tacgagggat ctttccagcc tttgttcaag gacggcagat tcactctgat 120 caacaaacag actgcaatgg tagacatgtt gggaagacaa tatgatgtca actctgagtt 180 agcttcgaac ttcaacgtgt gtggtaaaaa accagaagtt ttacacaacg ttggtgaagc 240 ggatttttcg ggactcaaca ggaagtactt tgatgacacc aatacctact ctccgttggc 300 agccataaac gagttcacta aattcgtccc tggtgtaaga cttactaagg gcgaagtgga 360 cgcttttgca aaaagtcaaa tctatgagga ctcccaagag gcgtacatct tgaatatgct 420 tatttcgtgg tttaaagctc tgttgtatga ggacactaac tctaaagaca atgtactgca 480 cgtgaagcaa agcggatacc aagactcgca cgtcaaagcg gaatatggag gtgtaaccgg 540 agatgttgtc cacgaaataa acatggggcc tccggttgat gacatgcccg aagtaatgat 600 gatggtgaga agtaaggaca attattggga cagaccatac gtgctaagat tcgataatag 660 gtcttcggct caatacactt tctacataac tcattgtttt ggcagggatg gcacatctcc 720 gcttaacgtg gacattcaca taccgagtgt agacttcgac cagatgttat tcgaaccagc 780 ttccggggct atgagatcaa tcaccgaccc ggcggcactc ccttggtgca aatccggcac 840 cttattcggc tggatcaaag actacgttac tcttaacaga gtagaacggg cctttagtgc 900 agcatttgag actttgactg ctatagcatt cactccaatg ccatcttatc aagagagttt 960 ggtgtgggac aaagcgataa cgcaagtcgt gattgcaaaa tttgctccgt gtagagctaa 1020 aataccttct aacctggaag gtgaggctat ggtgacagac atggatgcgc acgatttcgt 1080 actggacgag actaaaactc ccaggaaagc actgttttct ggagccatga ttaactatct 1140 agcttttatg ggcctacatg cgatactttc aaattacgct tctaggcacg aaaattggag 1200 atcagccttt ttacacagcc acgaagaact tgctatactt cacgatagga ccgtaagggc 1260 tgcattaacc agtgtcataa ctggcaaaga aatggttact ttcatgaacc caaatctctt 1320 tgtatcttat gatgttactc cgatggtcaa cgtaagtaaa gtaagcttcg aagaagtgtt 1380 agagagggga tacccgtcat ctttgcccgt acacggcgtg gtgccaatgg tgtcaggatc 1440 cctcttcttg tccgctaacg catcagacgt tgcctcacag tgtcaccttg aacagggcat 1500 gaaggtcacg gtagatgaat atggcactgt gagcccagaa gatgcgctta gggtggctca 1560 aatgtataga atgtttggtc acgaacttga aataagatcg gaaaagactg aggaaataca 1620 tgaactgttc gctccggtgc aagagtgcgt catttaccct tcggcactac tttacaacac 1680 gagggacaca gatagattaa agctagtgtc gtcactgcgg agacctggcc gcagtagcac 1740 tataccagac gtttcggctc tgaccgctgg acaaacaatc accatcgatt acacgatacc 1800 taggataggc atgcactact tcaacaaaag ggtgctcccc atagctccgt caatggtatt 1860 acctcaaagg aaaagggaaa taacgttcag ggtcaaaggc catacagttc tccataaggt 1920 caaaatgaac gcttcaaacg tgacaagacc tgtgaaggat tttcacggag gcgaaataca 1980 ggtggcacct ttgttgccag ttctaaggaa tgctcgtgtg ccaatccaag tcaatcagac 2040 ttcggaggag gacgtaactg ccgaagatgt agagtagaga actataaaaa ctccaaatac 2100 acgggaactg acacatcgga ctatctatcg caatacggac aactatataa caggaattca 2160 ttcatagggc ttaacgtgca gccatgtgaa ggtgaggaaa gcacgggcaa cagatgggag 2220 tttgccgaca gacaaattcc cttaacgata tctctaacaa gccggggaaa cattgaagca 2280 gtaccgtttt cagaagctca gtatgccttc ctggaccggg aaagctcaaa taaattcggc 2340 atattcgagg caagtaaaag cgtgtatggg gtaacaatgt ctgggttggt gatagctaat 2400 ggtaaggcta aatttttctt cgcctcaatc aagcaatatt tgctaaccca atctaaagca 2460 atgttaatag ccatgaccag acacttctct agcctgtacg agagctacgc ttatgatgat 2520 cctacgtcac cggtaaacct attcagagac agattccccg gtagaagcga aaatgaagcg 2580 atgacattca agcaaatgga ggagctgccg aagtctaaaa tttcaggagc gcaccatttt 2640 cacttcacac ctatgcaagt gctgaaatcg atagggagag ggagactgga aagggcgatc 2700 caggcatcac ggctaccaaa ggacgccgaa atgacgtttg ccacagggat gctactgtgg 2760 tacacatcta ttagtgatca gatggcagaa ctaatcagag gcgcgggaat attcaagtgt 2820 gatagtgtga gggaatacgt aaaagaaatg aaacagctat cagtggaggc gaagtcgctg 2880 caaaacctcg tgaccgatga cctaagaaca gtattcgagt tagaggtgct cgtaaataga 2940 atcgacggtg tagtagactg ggagaaagag aaggaaaaca gacagtcagt aaacgtgaca 3000 aacataaagg attcagatgt gtttagatct gcgtgtaaga tatttgaaga cgccaaaggt 3060 ataggccggc gcccgaagag cttcagttgg gagagctatt gggctaacag gtggcaatgg 3120 agtgctgcgg gcagcataca ctcacaatat cccagagaca tggagtacgt aattagggac 3180 caacagtcac ttaaaaacaa gtttataact atatccaata tgcccaaatg tacagtagac 3240 tacttttcgg acagggagcc gcaggtgcaa ggttggtcgt caacgaagta tgaatggggc 3300 aagcaaagag caatatatgg gacagatctg actagctacg tactgtctaa tttcgcgttt 3360 tacaattgtg agaacgtact accaaatcaa tttccagtcg gacgagatgc caatgacgaa 3420 aacgtggtga acagagtttc gggagtgcta aataacagaa tgcctttctg tcttgacttt 3480 gaggacttca atagtcaaca cagctcgggc aacatgaagg ctgtaatata cgcttatatc 3540 gagactttca tagattgtct tactccggaa caagagcaag cggcaatgtg gaccgcagcg 3600 tcattagaca aacagataat caatgacaac gttggaacca agactacgta tgaatctaaa 3660 ggaacgctac tttcggggtg gaggctgacg actttcatga acagtgtgtt gaactatatt 3720 tatacaacga aattagcagc agaagaaaag cgtccgggtg atagcttgca caacggagac 3780 gatgtcttaa taggagtgag gtcaatggct ctgccgcaga ggtgtatgca aaacgccatt 3840 aaatataacg tgcgaatgca aagcagcaaa tgcgccgtgg gtgcaattgc agaattcctg 3900 cggatagacc acaaacaggg aggcaacggc cagtacctat ccagagcagt ggccacaatg 3960 gtacattcga gaattgaaag tagagtctcg actgacataa gagacttagt acaatcaatg 4020 gaaaacagat tcgctgacgc aaaaggcaga gggatggcga atgacatcat atccggattg 4080 cgggaacagt actacatgag gcagagtgtg ctgtgtgaca ccgacgtaga ggacatatac 4140 ttgataaaga atgcgcacag agttgtagga ggaataagcg aagaaaaaga ctcgaaaatg 4200 ggtgttttga taacatccca acttagagcg cagaagaacg tgtcaatacc gtacttgccg 4260 ggagtaaatg aatatgcaaa cgaaatacac aaagcattaa aaataaatgt gtcaattaag 4320 actatatgtg acagattata cgacgctaca tacgaagctg tctcaatcaa agatcgcaag 4380 atgaaaatct tacgggaaaa cagagatcag tggttcgtta acgtacgcag aatatacaaa 4440 gcacataagg gtagtcaatt gtcacagaat tacggtaaag cagccttagt aggattcgca 4500 ttggaagtgt tgggcagaga aatgcctgat gcaaccataa caacaatact gaatacttca 4560 caaaggccac tagacctaat taagcacata ttataaatgt gcacaaaaga ccagcagggt 4620 ccataacaaa catcctgaat acttcacaaa ggcca 4655 //