ID JN678803; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC JN678803; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Cotton leaf curl Multan virus isolate CLR_07 segment A, complete sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Kumar J., Roy J.K., Tuli R.; RT "Diversity of begomovirus infecting cotton in India"; RL Unpublished. XX RN [2] RP 1-2740 RA Kumar J., Roy J.K., Tuli R.; RT ; RL Submitted (28-AUG-2011) to the INSDC. RL Agri-Biotechnolgy, National Agri-Food Biotechnolgy Institute, India, C-127, RL Phase-8, Mohali, Punjab 160071, India XX DR MD5; d112b6b89b7ded1f590dac0c392484c5. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Cotton leaf curl Multan virus" FT /segment="A" FT /isolate="CLR_07" FT /mol_type="genomic DNA" FT /country="India:Sri-Ganganagar" FT /collection_date="Aug-2010" FT /db_xref="taxon:223252" FT gene 122..484 FT /gene="AV2" FT CDS 122..484 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:C9W953" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C9W953" FT /protein_id="AEY75696.1" FT /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSHDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQRACPHCPRHKTTGMDKQAYAQE FT TQNVPDVQKSGCSKGM" FT gene 282..1046 FT /gene="AV1" FT CDS 282..1046 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:C9W954" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C9W954" FT /protein_id="AEY75697.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSVLAPIVRVTKQQAWTN FT RPMHRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGCPIVW FT STFLCQVSLCFRLRYGWMKIYRPESHEFGDVLLVRDRRPVDKPQDFGEVFNMFDNEPST FT ATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTE FT NALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1049..1453) FT /gene="AC3" FT CDS complement(1049..1453) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:H2E1K3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E1K3" FT /protein_id="AEY75698.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTMNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1146..1598) FT /gene="AC2" FT CDS complement(1146..1598) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:H2E1K4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E1K4" FT /protein_id="AEY75699.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNLPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1495..2586) FT /gene="AC1" FT CDS complement(1495..2586) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E1K5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E1K5" FT /protein_id="AEY75700.1" FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLQTPTNKKFIKI FT CKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYID FT KDGDTVEWGRFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPGSPIFLLFLLLLSIKFQKNLKFGLSTTLSMPLRGPFRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLDRPL FT YSGTNQSTAQGSEEAQQEEESRS" FT gene complement(2130..2432) FT /gene="AC4" FT CDS complement(2130..2432) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C9W958" FT /protein_id="AEY75701.1" FT /translation="MGNLISMCSSSSRGNTSARISDSSTWYPQPGQHISIRTFRELNQA FT QMSRTTSTRTGTPSNGDDFRSMDDLLEEVNRQPTTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2740 BP; 705 A; 559 C; 641 G; 835 T; 0 other; accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga ttaacgctcc ttcggctata agtacttgcg cactaagttt caaattgaaa 120 catgtgggat ccactagtaa acgaattccc ggatacggtg cacgggtttc gttgtatgct 180 ttctgtcaaa tatttgcaac ttttgtcgca cgattattct ccagataccc ttggttacga 240 gttaatacgt gatttaatct gtattctacg ctcccgtaat tatgtcgaag cgagctgccg 300 atatcgtcat ttctacgccc gcgtcgaaag tacgccggcg tctgaacttc ggcagcccat 360 acaccagcgt gcttgccccc attgtccgcg tcacaaaaca acaggcatgg acaaacaggc 420 ctatgcacag gaaacccaga atgtaccgga tgtacagaag tccggatgtt ccaaggggat 480 gtgagggtcc ctgtaaggta cagtcgtttg aatctcgaca cgatgtcgtt catattggta 540 aggtaatgtg tatttctgat gttactcgtg gtgtcggttg ccccatcgtt tggtcaacgt 600 ttttgtgtca agtcagttta tgttttaggt taagatatgg atggatgaaa atatacagac 660 cagaatcaca cgaattcggt gatgttcttt tagtccgcga tcgacgtcct gttgacaaac 720 ctcaggattt tggtgaggta tttaatatgt ttgacaatga acccagtaca gcgactgtga 780 aaaatagtca tagggaccgt taccaggtgt tgaggaaatg gcatgcaacc gttacgggtg 840 gtcaatatgc atcgaaggaa caggctttgg tcaagaagtt tgtcagagtt aacaattatg 900 ttgtttacaa tcaacaggaa gcaggaaaat acgagaatca tacggaaaat gcgttaatgc 960 tttatatggc ttgtactcac gctagcaacc ctgtttatgc tacgttgaag attaggatat 1020 atttttatga ctctgtaacg aattgatatt aatgaagttt gaattttatt tctgaatatt 1080 gatctacata catagtttgt tggattacat tgtacaatac atgttctaca gctttaataa 1140 ctaaattaat tgaaattaca ccgagattgt tcagatattt gaggacttgg gttttgaata 1200 cccttaagaa aagaccagtc tgaggctgta aggtcgtcca gattcggaag gttagaaaac 1260 acttgtgcag tcccagagct ttccgagtgt tgtaattgaa ctggatcctg atcgtgagta 1320 tgtccatatt catcgtgaat ggacggttga cgtggctgat gatcttgaaa taaaggggat 1380 ttggaacctc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg 1440 tgcgtgaatc catggttgtg gcagttgatt gacagataat aagaacaccc gcattcaaga 1500 tctactctcc tcctcctgtt gcgcctcttc gcttccctgt gctgtacttt gattggtacc 1560 tgagtacagg ggtctatcaa gtgtgatgaa gatcgcattc tttactgccc agttctttag 1620 tgcggtgttc ttttcctcgt ctaggaattc tttataactg ctgtttggac caggattgca 1680 gaggaagatt gttggtatcc cgcctttaat ttgaactggc ttcccgtact ttgtgttgga 1740 ttgccagtcc ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat gcgggtcgac 1800 gtcatcaatg acgttgtacc aggcgtcgtt actgtaaacc ttgggactca ggtccagatg 1860 tccacacaaa tagttatgtg gtcccaatga cctagcccac atcgtcttcc ccgtacgact 1920 atctccctca attactatac tccgaggtct aaaggggccg cgcagcggca tcgacaacgt 1980 tgtcgatagc ccaaacttca agttcttctg gaacttgatc gaaagaagaa ggagaaaaag 2040 gagaaatata ggggagccgg gtggctcctg aaagattctg tctagatttg catttaaatt 2100 atgaaattgt agtacaaaat ctttaggagc tagttcctta atgactctaa gagcctctga 2160 cttactgcct gcgttaagtg ctgcggcgta agcgtcgttg gctgtctgtt gacctcctct 2220 agcagatcgt ccatcgatct gaaatcgtcc ccattcgacg gtgtccccgt ccttgtcgat 2280 gtagtccttg acatctgagc ttgatttagc tccctgaatg ttcggatgga aatgtgctga 2340 cctggttggg gataccaggt cgaagaatcg ctgattctgg cacttgtatt tcccctcgaa 2400 ctggatgagc acatggagat gaggttcccc attctcgtga agctctttgc aaattttgat 2460 gaatttttta tttgttggag tttgtaggtt ttggatttgg gaaagtgctt cctccttagt 2520 aagagagcat tttggataag tcagaaaata atttttggaa tatatttgaa agcgtttaga 2580 aggcatgttt gactaaaatt gagtaccgat tgactccctc tggcaactct ctctggtata 2640 tcggtaccca atatatagtg agtaccaaat ggcatatgtg taattttgta atgaaattca 2700 aaatcctcac gctccaaaaa gcggccatcc gtataatatt 2740 //