ID   JN654478; SV 1; linear; genomic RNA; STD; VRL; 533 BP.
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AC   JN654478;
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DT   29-JAN-2012 (Rel. 111, Created)
DT   13-AUG-2012 (Rel. 113, Last updated, Version 2)
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DE   Gremmeniella abietina mitochondrial RNA virus S15 isolate Ka04-30
DE   RNA-dependent RNA polymerase gene, partial cds.
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KW   .
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OS   Gremmeniella abietina mitochondrial RNA virus S15
OC   Viruses; Riboviria; Narnaviridae; Mitovirus; unclassified Mitovirus.
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RN   [1]
RP   1-533
RX   PUBMED; 22862915.
RA   Botella L., Tuomivirta T.T., Vervuurt S., Diez J.J., Hantula J.;
RT   "Occurrence of two different species of mitoviruses in the European race of
RT   Gremmeniella abietina var. abietina, both hosted by the genetically unique
RT   Spanish population";
RL   Fungal Biol 116(8):872-882(2012).
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RN   [2]
RP   1-533
RA   Tuomivirta T.T., Vervuurt S., Hantula J.;
RT   ;
RL   Submitted (06-SEP-2011) to the INSDC.
RL   Forest Pathology, Finnish Forest Research Institute, Vantaa Research Unit,
RL   Jokiniemenkuja 1, Vantaa FI-01300, Finland
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DR   MD5; 64edeba64e867838f7347693a996d0ca.
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FH   Key             Location/Qualifiers
FH
FT   source          1..533
FT                   /organism="Gremmeniella abietina mitochondrial RNA virus
FT                   S15"
FT                   /host="Gremmeniella abietina type A"
FT                   /isolate="Ka04-30"
FT                   /mol_type="genomic RNA"
FT                   /country="Finland"
FT                   /collection_date="2004"
FT                   /PCR_primers="fwd_name: Mito-SV5str, fwd_seq:
FT                   gayccrgaatgtaarrtkag, rev_name: Mito-SV3str, rev_seq:
FT                   catctyttagcaaattcrtawgtat"
FT                   /db_xref="taxon:1136036"
FT   CDS             <1..>533
FT                   /codon_start=2
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RdRp"
FT                   /db_xref="GOA:H2DRX2"
FT                   /db_xref="InterPro:IPR000477"
FT                   /db_xref="InterPro:IPR008686"
FT                   /db_xref="UniProtKB/TrEMBL:H2DRX2"
FT                   /protein_id="AEY76135.1"
FT                   /translation="IVAMLDYTTQLFLRPIHNDLFKLLKKLPQDRTFTQNPLNDWEDNE
FT                   HSFWSIDLTAATDRFPISLQRRLLLYIYSDPEIANSWQNLLVHREYARNGLNPIKYSVG
FT                   QPMGAYSSWPAFTLSHHLVVHWCAHLCNINKFKDYIILGDDIVIHNDIVAKKYIEIMGK
FT                   LGVGLSDSKTHVSK"
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SQ   Sequence 533 BP; 186 A; 87 C; 87 G; 173 T; 0 other;
     gatagtagct atgttagatt atacaacaca gctatttctc cgaccaatac acaatgactt        60
     gtttaaactt cttaagaagc ttccacaaga taggactttt actcaaaatc cattaaatga       120
     ttgagaagat aatgaacact cattttgatc aatcgacctt acggcagcaa ctgatagatt       180
     tccaataagt ttacaacgtc ggttattact atatatatat agtgatccag aaattgcaaa       240
     ctcttgacaa aatctattag tacatagaga atatgctcgt aatgggctaa atccaattaa       300
     atattcagtt ggacagccta tgggagcata ctcgtcctga cctgctttca cattatctca       360
     ccatcttgta gttcattgat gtgcacattt gtgtaacatt aataaattta aagattatat       420
     aattcttggt gatgatatcg ttatacataa cgatatagtt gctaagaaat atattgaaat       480
     aatgggaaag ttaggagtgg gtctatctga tagtaaaact catgtatcta agg              533
//