ID   JN654469; SV 1; linear; genomic RNA; STD; VRL; 533 BP.
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AC   JN654469;
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DT   29-JAN-2012 (Rel. 111, Created)
DT   13-AUG-2012 (Rel. 113, Last updated, Version 2)
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DE   Gremmeniella abietina mitochondrial RNA virus S6 isolate AHT04-5
DE   RNA-dependent RNA polymerase gene, partial cds.
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KW   .
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OS   Gremmeniella abietina mitochondrial RNA virus S6
OC   Viruses; Riboviria; Narnaviridae; Mitovirus; unclassified Mitovirus.
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RN   [1]
RP   1-533
RX   PUBMED; 22862915.
RA   Botella L., Tuomivirta T.T., Vervuurt S., Diez J.J., Hantula J.;
RT   "Occurrence of two different species of mitoviruses in the European race of
RT   Gremmeniella abietina var. abietina, both hosted by the genetically unique
RT   Spanish population";
RL   Fungal Biol 116(8):872-882(2012).
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RN   [2]
RP   1-533
RA   Tuomivirta T.T., Vervuurt S., Hantula J.;
RT   ;
RL   Submitted (06-SEP-2011) to the INSDC.
RL   Forest Pathology, Finnish Forest Research Institute, Vantaa Research Unit,
RL   Jokiniemenkuja 1, Vantaa FI-01300, Finland
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DR   MD5; 6664a8753019a6c829d73cb8be2162c9.
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FH   Key             Location/Qualifiers
FH
FT   source          1..533
FT                   /organism="Gremmeniella abietina mitochondrial RNA virus
FT                   S6"
FT                   /host="Gremmeniella abietina type A"
FT                   /isolate="AHT04-5"
FT                   /mol_type="genomic RNA"
FT                   /country="Finland"
FT                   /collection_date="2004"
FT                   /PCR_primers="fwd_name: Mito-SV5str, fwd_seq:
FT                   gayccrgaatgtaarrtkag, rev_name: Mito-SV3str, rev_seq:
FT                   catctyttagcaaattcrtawgtat"
FT                   /db_xref="taxon:1136057"
FT   CDS             <1..>533
FT                   /codon_start=2
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RdRp"
FT                   /db_xref="GOA:H2DRW3"
FT                   /db_xref="InterPro:IPR000477"
FT                   /db_xref="InterPro:IPR008686"
FT                   /db_xref="UniProtKB/TrEMBL:H2DRW3"
FT                   /protein_id="AEY76126.1"
FT                   /translation="IVAMLDYTTQLFLRPIHNDLFKLLKKLPQDRTFTQNPLNDWEDNE
FT                   HSFWSIDLTAATDRFPISLQRRLLLYIYSDPEIANSWQNLLVHREYARHGLNPIKYSVG
FT                   QPMGAYSSWPAFTLSHHLVVHWCAHLCNINKFKDYIILGDDIVIHNDIVAKKYIEIMGK
FT                   LGVGLSDSKTHVSK"
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SQ   Sequence 533 BP; 183 A; 89 C; 86 G; 175 T; 0 other;
     gatagtagct atgttagatt atacaacaca gctatttctc cgacctatac ataatgactt        60
     gtttaagctt cttaaaaagc taccacaaga tagaactttt actcaaaatc cactaaatga       120
     ttgagaagat aatgaacact cattttgatc aatcgacctt acggcagcaa ctgatagatt       180
     tccaataagt ttacaacgtc ggttattact atatatatat agtgatcccg aaattgcaaa       240
     ttcttggcag aatctattag tacatagaga atacgctcgt catggactta atccaataaa       300
     atattctgtt ggacagccta tgggagccta ttcatcctga cctgctttca cattatctca       360
     tcatcttgta gttcattgat gtgcacattt gtgtaacatt aataaattta aagattatat       420
     aattcttggt gacgatatcg ttatacataa tgatattgtt gcaaagaaat atattgaaat       480
     aatgggaaag ttaggcgtgg gtctatctga tagtaaaact catgtatcga aag              533
//