ID JN635327; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC JN635327; XX DT 07-NOV-2011 (Rel. 110, Created) DT 22-NOV-2012 (Rel. 114, Last updated, Version 2) XX DE Beet black scorch virus isolate Xinjiang variant m149, complete genome. XX KW . XX OS Beet black scorch virus OC Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; OC Tombusviridae; Betanecrovirus. XX RN [1] RP 1-3644 RX PUBMED; 22971822. RA Xu J., Wang X., Shi L., Zhou Y., Li D., Han C., Zhang Z., Yu J.; RT "Two distinct sites are essential for virulent infection and support of RT variant satellite RNA replication in spontaneous beet black scorch virus RT variants"; RL J. Gen. Virol. 93(Pt 12):2718-2728(2012). XX RN [2] RP 1-3644 RA Xu J., Wang X., Han C., Li D., Yu J.; RT ; RL Submitted (01-SEP-2011) to the INSDC. RL State Key Lab. for Agrobiotech., China Agricultural University, 2 RL YuanMingyuan Western Road, Beijing 100193, China XX DR MD5; d8ee7e66621002f0352f8eaffc41d9f3. XX FH Key Location/Qualifiers FH FT source 1..3644 FT /organism="Beet black scorch virus" FT /host="sugar beet" FT /lab_host="Nicotiana benthamiana" FT /isolate="Xinjiang variant m149" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="16-Apr-2009" FT /PCR_primers="fwd_name: bb-421, fwd_seq: FT tgtaatacgactcactatagaagaaacctaaccagtttct, rev_name: bb-412, FT rev_seq: cccgggcacctggaagaccagg" FT /note="variant obtained after passage propagation on N. FT benthamiana in greenhouse" FT /db_xref="taxon:196375" FT CDS 36..2210 FT /codon_start=1 FT /transl_except=(pos:645..647,aa:OTHER) FT /product="82K protein" FT /note="RNA polymerase; ORF2; translational readthrough of FT ORF1" FT /db_xref="GOA:G8HU32" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:G8HU32" FT /protein_id="AER58221.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCEEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT FT PQPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGA FT DRKTLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSR FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF FT FMQFPLSSGPKTKSDMSVALQEDWKYKFNRTGCFKNLTPTPQSRYSFWRAFGVLPDEQI FT ALENGFSRLSFDKLDQDTQEEVSLLQFSGA" FT CDS 36..647 FT /codon_start=1 FT /product="23K protein" FT /note="RNA polymerase; ORF1" FT /db_xref="GOA:G8HU15" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:G8HU15" FT /protein_id="AER58222.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCEEMEERRAVLGPSYGK" FT CDS 2228..2419 FT /codon_start=1 FT /product="7K protein A" FT /note="ORF3" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q8B5R7" FT /protein_id="AER58223.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421..2618 FT /codon_start=1 FT /product="7K protein B" FT /note="ORF4" FT /db_xref="GOA:G8HU17" FT /db_xref="UniProtKB/TrEMBL:G8HU17" FT /protein_id="AER58224.1" FT /translation="MSIIYVVQEKPSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGTSTSKVSTN" FT CDS 2434..2577 FT /codon_start=1 FT /product="5'K protein" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:G8HU24" FT /protein_id="AER58225.1" FT /translation="MSYRRSPLGFSCGHWLLQLCALLDSYRTLHLKDLTTLITKTIRRR FT NT" FT CDS 2647..3345 FT /codon_start=1 FT /product="coat protein" FT /note="virus shell; ORF6" FT /db_xref="GOA:G8HU19" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProtKB/TrEMBL:G8HU19" FT /protein_id="AER58226.1" FT /translation="MAPKRNKGGKKSRMSDETVRAPTAGGVIQRTPGIPPRIRSTTIGT FT RVTNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGTAATNVGNLMIKYSIE FT LIEPIPAAIN" XX SQ Sequence 3644 BP; 903 A; 860 C; 939 G; 942 T; 0 other; aagaaaccta accagtttct cgttgatcag tgatcatgga ttcaatcccg tatgtgatcc 60 tgcgcatact cgattttatc ttccactcca tcttctttcc atccttactc ttcatcatca 120 accacaacac caccatcctg tgggcatgcg cttgtgccta tgggttctac cgtgcattcc 180 gcctcatctt caagataaag gtggaagtac acccagccac ccgagccgtc ttcaaggaca 240 tggttactcg cttccagcgg gagagtatgt tctcacctga cgacgaagtg ccggagggca 300 tccctattca cgaggatgtt gaccttgtta gcgaccccac acacaaagat attaagcggg 360 tccgtgctag caggcgagtc tcttatgccg tgagggtagc ccatgtagcc aagtctaagg 420 tgggattact cgccaatact aaggcaaatg agctggtgta ctcccgtcta tgccgagacg 480 agatggttac ccacggtgtg cgcccatcgc acattgcaca cgcagtgccg cttgctgtcg 540 cggcctgctt cataccgttg gacagtgatt tcctcgcagc ttctatcaga aactgcgaag 600 agatggagga gcggagggcc gtactagggc cctcatatgg aaaataggga ggcctactct 660 gcaccagcgg gtttaccacg cctacttggc gtggtaatcc agagggtttg ctggtgaaga 720 gaggaccacc tctggctaaa cctaggaaac tgtaccgttt ttctgggttt gggactcata 780 tacggtacgg agtgcacgat cactcattgg gcaatgttcg gaggggactt gttgagcggc 840 tattcatggt tgaaaccaag gatggcttag ctccaacacc acagcccacc cctggcgtgt 900 acgccaagtt atcccggttt catgaccttg ttagtgccaa cctaacctcg accaccagat 960 taacatacga gcaattcctc ggattttatt ctggtcgcaa attagagagg taccaacagg 1020 ccgtggagtc gttagcaatc cgcccaatag gggtacagga tgcttggctt agcacgtttg 1080 ttaaggctga aaaattaaac atctcagcta aacccgaccc ggcacctagg gttattcagc 1140 ctaggtcacc gaggtacaat gtggaggttg gacggttcct cagacacgct gaggaacatc 1200 tgttcgacgc tatcaaccgt gtgtatggtg gacggacggt attcaagggg ttgaatgccg 1260 atcaggctgg catggagatg caagccatgt ggcaagaatt cgacaatcct gttggtattg 1320 gtatggatgc ctctcgtttc gaccaacacg tctctaagga ggcgttggag tttgaacaca 1380 agatctggct atccatgtac catggggctg acaggaaaac attatcgaag ctgttgggga 1440 tgcaaatcca caaccgcggt cttgccagat gccctgatgg ggaaatcagg tacacagttg 1500 aggggtgtcg tatgtctggg gatatcaaca catcttccgg aaactgctat atcatgtgtg 1560 cttcggtgca caattattgc agccggttgg gtgttaaaag attcaggctt gccaacaatg 1620 gtgatgattg catgcttgtt gtcgaagcca aggatgaagc acgtgtcagg cagggactca 1680 tcgagtatta tagggaattg ggtttcacca tgaaagtgga acctactgtc tatgaactcg 1740 agcacttgga gttttgccag acacgtccag tccttgtcga tggggcatat cgaatggtgc 1800 gcaatcttca ccagggcatg tctaaggatc ttcactcctt gcacgatctt ggtagtagga 1860 aagctgctga agcttgggtt tcagcggttg gtagtggagg ccgtgtgatg aatgatggag 1920 taccagtgct caaatcattc ttcatgcagt ttcctctatc ctctggacct aaaaccaagt 1980 ccgacatgag tgtagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2040 tcaagaactt gacacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgc 2100 taccagatga acagattgcc ctggagaatg ggttttctcg tctcagcttt gacaagctgg 2160 accaggatac ccaggaggag gttagcctcc tccagttctc tggggcatga aaacctaacc 2220 acttttcatg gaacaacagc gtagtgaaca acgtcgtgag cgtagagtga gaagtagatc 2280 ggaggacagg aagtctatgt ctgatgtagg gcaatctgct gtcaataggg aagcagatgt 2340 caagaaagat atgggtccat cggtttctat gacggtggtg ggggagaacg tagagtttac 2400 acaacatttc cacttctgaa atgagcatca tttatgtcgt acaggagaag ccctctgggt 2460 ttctcgtgtg ggcattggtt gttgcaattg tgtgcattat tggactctta tcgtacactc 2520 cacctgaaag acttaaccac tcttatcacg aaaacaatca gaagacgcaa tacataacta 2580 ttggaggaac atccactagt aaagtttcca cgaactgaat tttctgcttt ctagtatagt 2640 caataaatgg cacctaagcg caataaagga ggcaagaagt cccgcatgtc cgatgagaca 2700 gtgcgggctc ctactgcagg gggcgttata caacgcacac ctggcattcc tccccgcatt 2760 aggtccacca ctattggtac gcgtgtcact aacactgagt tgctcgccgg agtgaatgtc 2820 gctgcggcgg gagctttctc agttgttggt gctggtcttt tccccagcaa ccttggttgg 2880 ctcaatggga ttgcttccaa ttatagcaaa tttaggtggc ttgctatcaa gctcatctac 2940 atccccattg ttcctaccac gaccgctggg gcaatgacca tggctttatc gtatgatcct 3000 gctgatgcta caccaactag tttccaacag gtacaacaga tgtataatag catcacagca 3060 cctgtctggg ctggatttga tggagctact gttcagctgc taggggagag accaacaact 3120 ggggctgtgt gcattgatgt agatgtgaat cggtttggat tcacatggta tagatatgct 3180 acgcttgctg ccattaccgc actcactgca aatgatagga atctctatat tcctagtgtc 3240 tgcaatgtgg ctacgtctgg tggcactgca gccaccaatg ttggcaatct gatgataaag 3300 tacagcattg agctcattga gccaatacct gctgccatta attagatccc acatcctggt 3360 gtggttaatc cagtgaaaaa tattaggaaa tccttgggat tcacacccca gggaggattg 3420 cttgcatagt gcaggtgtgt tgagttacac tatgaggtat tggtgctgaa tcctggtaaa 3480 caggcttgac aggtttgggt ggttccagac cgatgtatta cccaagatac tcatggtact 3540 ctactagaaa acactatgcg tgcgcacacg gctggctatg tcctatcata gctgggggcc 3600 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc 3644 //