ID JN604489; SV 1; circular; genomic DNA; STD; VRL; 2747 BP. XX AC JN604489; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Chilli leaf curl virus isolate Sal1, complete genome. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2747 RA Khan A.J., Al-Zaidi A.M.I., Haq Q.M.I., Al-Hinai F.M.; RT "Molecular characterization and infectivity of Chilli leaf curl virus from RT Oman"; RL Unpublished. XX RN [2] RP 1-2747 RA Khan A.J., Al-Zaidi A.M.I., Haq Q.M.I., Al-Hinai F.M.; RT ; RL Submitted (21-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 57746517c0aa6e855c6afaf01e984fb2. XX FH Key Location/Qualifiers FH FT source 1..2747 FT /organism="Chilli leaf curl virus" FT /host="pepper" FT /isolate="Sal1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:172278" FT gene 150..515 FT /gene="V2" FT CDS 150..515 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DGU2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGU2" FT /protein_id="AEY77416.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES FT EAQDVQDVQKARCSEGM" FT gene 310..1071 FT /gene="V1" FT CDS 310..1068 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="encapsidation" FT /db_xref="GOA:H2DGU3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2DGU3" FT /protein_id="AEY77417.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRRPDVPRGCEGPCKVQSFESRHDVVHIGKVMCIKGTGLTHRVGKR FT FCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEPSTAT FT VKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENA FT LMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1065..1469) FT /gene="C3" FT CDS complement(1065..1469) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGU4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGU4" FT /protein_id="AEY77418.1" FT /translation="MDSRTGEPITAAQAQNGVFIWEITNPLYFKITEHHNRPFLRSQDI FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY" FT gene complement(1210..1614) FT /gene="C2" FT CDS complement(1210..1614) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DGU5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DGU5" FT /protein_id="AEY77419.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSTEWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1517..2602) FT /gene="C1" FT CDS complement(1517..2602) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:H2DGU6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DGU6" FT /protein_id="AEY77420.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVPFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPGELEEWASVNVVGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDQASSR" FT gene complement(2152..2445) FT /gene="C4" FT CDS complement(2152..2445) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGU7" FT /protein_id="AEY77421.1" FT /translation="MGNLIYTCSSHSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2747 BP; 758 A; 553 C; 635 G; 801 T; 0 other; accggatggc cgcgattttt ttttaccgtg gaccccgcga tgcacgtgct gacaaataca 60 tgtggaccaa ttaaaaacgt ccctcaaagc ttaattgttt cgtggtcccc tctataaact 120 tgggctccaa gtagtgggtt tttatcacaa tgtgggatcc tttactaaat gagtttcccg 180 aaagtgttca tgggtttagg tgtatgttag cagtgaaata tctgcaatta gtagaaaatt 240 catattcgcc agacacatta gggtacgatt taatcaggga tttaatttca gttattaggg 300 ctagaaatta tgtcgaagcg accagcagat ataatcattt ccacgcccgc ctcgaaggta 360 cgccgtcgtc tcaacttcga cagcccatat gccagccgtg ctgctgcccc cattgtccgc 420 gtcacaaagg caaaggcatg ggccaacagg cccatgaatc ggaagcccag gatgtacagg 480 atgtacagaa ggccagatgt tccgagggga tgtgaaggcc catgtaaggt ccagtctttt 540 gagtctagac acgatgtagt tcatataggg aaggttatgt gtattaaggg taccgggtta 600 acccatagag taggtaagcg tttctgtgtt aagtctgttt atgtcttagg gaagatatgg 660 atggatgaga atatcaagac taagaatcac acgaatagtg tgatgttctt ccttgtccgt 720 gatcgtcgac ctacaggtgc accacaagat tttggagatg tgtttaatat gttcgacaac 780 gaacctagca ctgccactgt gaagaatatg catagagatc gttatcaggt cttgaggaaa 840 tggcacgcaa cggttactgg tggacagtac gcgtcgaagg aacaggcatt agttaagaag 900 ttcgttaggg ttaacaatta tgttgtgtat aaccagcagg aagctggaaa atatgagaat 960 catagtgaga atgctctgat gttgtatatg gcgtgtactc acgcctctaa ccctgtgtat 1020 gctacattga agatacgtat ctatttctat gattcagtat cgaattaata aagattatat 1080 tttattgaat atgattggtt tacatataca acgtgatcta atacattcca taatacatga 1140 tcaactgctc tatttacatt gttaatacta attacagcaa aattattaag cactttcaat 1200 acttgggttt taaataccct taagaaatga ccagtctgag gctgtaaggt cgtccagatt 1260 cggtaggtta gaaaacattt gtgcatcccc aacgctttcc tcaggttgtg attgaaccgt 1320 atctgcactg tgatgatgtc ttggcttctc aggaatggcc tgttgtggtg ctctgttatc 1380 ttgaaataca ggggatttgt tatctcccag ataaacacgc cattctgtgc ttgagctgca 1440 gtgatgggtt cccctgtgcg tgaatccata gccgtggcaa cgtaatgcga tgaaatatga 1500 acagccgcaa tcgaggtcaa cgcgacgacg cctggtcccc ttcttggcca gcctgtgctg 1560 cactttgatt ggaacctgag tagagtgggc ctgtgagggt gatgaaggtc gcattcttta 1620 aagcccaatg tttgagtgcg gaattctttt cttcatccaa gaactcttta tagctggaat 1680 tgggtcctgg attgcagagg aagatagcgg gaattccacc tttaatttga actggctttc 1740 cgtattttgt atttgattgc cagtcccttt gggcccccat gaattcttta aagtgtttta 1800 gataatgcgg gtcgacgtca tcaatgacgt tatacgaggc atcattgctg tacactttag 1860 ggctaaggtc taagtgacca cataggtagt tatgtggacc caacgaccta gcccacatgg 1920 tcttcccggt tcgactatca ccctcaatca caatactcat gggcctcaaa ggccgcgcag 1980 cggcacccac cacgttcaca gaagcccatt cctcaagttc accaggaact tgatcaaaag 2040 aagaagaaag aaaaggagaa acataaacat ccggtggagg cgtaaaaatc ctatctaaat 2100 tagcatttaa attatgaaat tgtaaaacat aatctttggg agctttctcc cttaaaatat 2160 tgagggccgc agccttggac cctgaattga ttgcctcggc atatgcgtcg ttggcagatt 2220 ggcaacctcc tctagctgat ctgccatcga tctggaaaac tccagagtca atgaagtctc 2280 cgtctttctc cacataggct ttgacatctg aagagctctt agctctctga atgttcggat 2340 ggaaatgtgc tgaccgggtt ggggaaatga ggtcgaagaa tctgttgttt gtgcattgat 2400 atttgccttc gaatgggacg agcacgtgta gatgaggttc cccattctcg tgcaattctc 2460 tgcaaaccct aataaataat ttatttactg gggtttctaa gttttgtaat tgggaaaggg 2520 cctcttcttt agtaagagag cagttaggat atgttaggaa ataattttta gcatttatat 2580 tgaatctccc cgctctaggc atattggtgg acactcaaac ttactatgca atcggtggaa 2640 tgggggacaa tttatatgtg tccaccaatg gcaaattggt aattgttgtt acattaaaaa 2700 aatttaaaat tcaaattccg acaaaagcgg ccatccgcat taatatt 2747 //