ID JN053458; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC JN053458; XX DT 14-SEP-2011 (Rel. 110, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE East African cassava mosaic virus-Uganda2 Severe isolate S4C6 segment DE DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Uganda2 Severe OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2799 RX PUBMED; 21812981. RA Ramkat R.C., Calari A., Maghuly F., Laimer M.; RT "Biotechnological approaches to determine the impact of viruses in the RT energy crop plant Jatropha curcas"; RL Virol J 8:386-386(2011). XX RN [2] RP 1-2799 RA Ramkat R.C.; RT ; RL Submitted (03-JUN-2011) to the INSDC. RL Plant Biotechnology, Institute of Applied Microbiology, Muthgasse, Wien RL A1190, Austria XX DR MD5; 122bd5b454ba5c02f512a5c4bec8b76b. DR EuropePMC; PMC4045720; 24896088. XX FH Key Location/Qualifiers FH FT source 1..2799 FT /organism="East African cassava mosaic virus-Uganda2 FT Severe" FT /segment="DNA-A" FT /host="Manihot esculenta" FT /isolate="S4C6" FT /mol_type="genomic DNA" FT /country="Kenya" FT /collected_by="Rose C. Ramkat" FT /collection_date="29-Aug-2009" FT /db_xref="taxon:223272" FT gene 172..528 FT /gene="AV2" FT CDS 172..528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:G3K0R6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G3K0R6" FT /protein_id="AEO18157.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQTVSKPRCP" FT gene 332..1105 FT /gene="AV1" FT CDS 332..1105 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G3K0R7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G3K0R7" FT /protein_id="AEO18158.1" FT /translation="MSKRPGDIIISTPVSKVRKRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRLYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQNFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLFYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(362..973) FT /gene="AC5" FT CDS complement(362..973) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:G3K0R1" FT /protein_id="AEO18159.1" FT /translation="MIICHVMIQLVKPFHQRLLLHARWTTNNSGMKFPQHLKPIPQIVL FT NCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKHHIISVILLLNIFIHPDLTKNVNGLD FT TKPLSDPVCQPRPTRHITNHLTDTKVLHIIPLLKRLDLTWAFTALRDIWASIQSVHLGF FT PIHGPVGPYFASGDADSGGNNTVRVWAVEVQPLPHLGYGC" FT gene complement(1102..1506) FT /gene="AC3" FT CDS complement(1102..1506) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G3K0P8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G3K0P8" FT /protein_id="AEO18160.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1247..1654) FT /gene="AC2" FT CDS complement(1247..1654) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:G3K0S0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G3K0S0" FT /protein_id="AEO18161.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1563..2642) FT /gene="AC1" FT CDS complement(1563..2642) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:G3K0S1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G3K0S1" FT /protein_id="AEO18162.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTIIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVSSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKVWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2252..2485) FT /gene="AC4" FT CDS complement(2252..2485) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G3K0S2" FT /protein_id="AEO18163.1" FT /translation="MECLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTLDFSKSMPEVQGGRANI" XX SQ Sequence 2799 BP; 735 A; 553 C; 727 G; 784 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaacgcgcc cgtgaaagaa 60 agtggtccct gcgcacttgt tttggtcggc cagtcatatt cacgcgtgaa agtctatata 120 tttgttgttt gtctttatag acttcgtcgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa 240 tacctgttac atctggagca ggaatacgat cgcggtacgg tcggggctga gtatatacgg 300 gatctaatag gggtgctacg gtgtaagaat tatgtcgaag cgaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaagag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gactgtatcg aagcccagat gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcaaag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggccggg gctgacacac agggtcggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ctggatggat gaaaatatta agaagcagaa 720 tcacactaat aatgtgatgt tttacctgct tagggataga aggccgtatg gcaatgcgcc 780 ccaaaacttt gggcagatat ttaacatgtt tgataatgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga atcatcacgt 960 gacatataat catcaggagg cagggaaata tgagaatcac acagagaatg cgttgttatt 1020 ttatatggca tgtacacatg cctcgaatcc tgtgtatgct acgctgaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaag gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1200 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg aagttgagaa aacacttgtg 1320 aatccccaat gccttccgaa ggttgtggtt gaaccgtatc tggagtgtga tgatgtcgtg 1380 gttcatgttc cctggcctct tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat 1440 gtcccaggta aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1500 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg aggtctaccc 1560 gcctacgtct gacggccctg gtcttcgctg tgcggtgttg gactttgatg ggcacttgag 1620 aacaatggct cgtggagggt gatgaaggtg gcattcttta aagcccagac tttaagagat 1680 tggttctttt cctcatccag aaactcttta tatgatgatg ttggtcctgg attgcagagg 1740 aagatagtgg gaatgccgcc ttttatttga attggcttcc cgtattttgt attgctttgc 1800 cagtcccttt gggcccccat gaattccttg aagtgcttga ggtagtgggg gtcgacgtca 1860 tcaatgacgt tgtaccaggc gtcgtttgaa gataccttgg gagacagatc caggtgtcca 1920 caaagataat tatggggtcc cagtgaacga gcccacattg ttttgccggt tcggctatca 1980 ccttctagaa caatactgat cggtctccat ggccgcgcag cgggactgca tatattttcg 2040 gatacccata cctctatgtc ttctgggact tgtgtaaaag aggatgataa gaacggacta 2100 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat gttatggaac 2160 tgtaaaaaaa aggactttgg atctttttct ttaataattt gaagagcctc ggatttagac 2220 gaagcattca acgcgtctgc atatacctga gctaaatgtt ggccctcccc ccttgcactt 2280 ctggcatcga cttggaaaag tccagcgtca agaaattccc ctcccttttc aatgtaagct 2340 ttgacatcgg acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat 2400 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc gaattggatg 2460 agaacatgga gatgaggcac tccatcctga tgtagttctc tgcaaaccct aatgaatttg 2520 ataatcgtcg ggtacgaaag ggcttgtaat tgggaaaggg cctcttcttt tgttaatgag 2580 catctgggat aggttatgaa ataatttttg gcatttattt gaaaacgacc ggctcttggc 2640 atattggctg tcgttttgga tcgggggaca ctcaaaactc tggagcaacg gtggaatggg 2700 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact tccattcaaa 2760 atttgaatgc cgaatattgg cggccatccg attaatatt 2799 //