ID JN053423; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC JN053423; XX DT 14-SEP-2011 (Rel. 110, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE African cassava mosaic virus isolate B5J2 segment DNA-A, complete sequence. XX KW . XX OS African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2781 RX PUBMED; 21812981. RA Ramkat R.C., Calari A., Maghuly F., Laimer M.; RT "Biotechnological approaches to determine the impact of viruses in the RT energy crop plant Jatropha curcas"; RL Virol J 8:386-386(2011). XX RN [2] RP 1-2781 RA Ramkat R.C., Calari A., Maghuly F., Laimer M.; RT ; RL Submitted (03-JUN-2011) to the INSDC. RL Plant Biotechnology, Institute of Applied Microbiology, Muthgasse, Wien RL A1190, Austria XX DR MD5; 2519bfc53eec66890fe988e52691193c. DR EuropePMC; PMC4045720; 24896088. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="African cassava mosaic virus" FT /segment="DNA-A" FT /host="Jatropha curcas" FT /isolate="B5J2" FT /mol_type="genomic DNA" FT /country="Kenya" FT /collected_by="Rose C. Ramkat" FT /collection_date="28-Aug-2009" FT /db_xref="taxon:10817" FT gene 134..475 FT /gene="AV2" FT CDS 134..475 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:G3K072" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G3K072" FT /protein_id="AEO17915.1" FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHSRLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLGEQAHV FT QKAHDVQDV" FT gene complement(272..637) FT /gene="AL5" FT CDS complement(272..637) FT /codon_start=1 FT /gene="AL5" FT /product="AL5" FT /db_xref="GOA:G3K073" FT /db_xref="UniProtKB/TrEMBL:G3K073" FT /protein_id="AEO17914.1" FT /translation="MDLIQNLFPTLCVSPGPRVTSLITLQIPRCFTSSLCSNDWTLHGP FT SQPLGMSGLLYILYIVGFLYMGLFTQARFRFVTWTVGAVARFLYGLSKFSLRRTLEPGV FT EMMISPGRFDIITSPDN" FT gene 294..1070 FT /gene="AV1" FT CDS 294..1070 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G3K032" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G3K032" FT /protein_id="AEO17916.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW FT VNRPMYRKPTMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH FT RVGKRFCIKSIYILGKIWLDETIKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNMFDN FT EPSTATIKNDLRDRFQVLRKFHATVVGGPYGMKEQALVKRFYRLNHHVTYNHQEAGKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" FT gene complement(1067..1471) FT /gene="AC3" FT CDS complement(1067..1471) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G3K026" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G3K026" FT /protein_id="AEO17917.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITKHQQRPFLLNQDI FT ITVQVRFNHNLRKELGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVIKYLDNIGVISINN FT VIRAADHVLFNVIANTIECKLTHEIKFNVY" FT gene complement(1212..1619) FT /gene="AC2" FT CDS complement(1212..1619) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:G3K027" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G3K027" FT /protein_id="AEO17919.1" FT /translation="MQSSSPSQNLSTQVPIKVTHRQVKKRAIRRRRVDLVCGCSYYLHI FT NCFNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPAEPGHHNSPGSIQSQ FT PEEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT gene complement(1528..2604) FT /gene="AC1" FT CDS complement(1528..2604) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:G3K028" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G3K028" FT /protein_id="AEO17918.1" FT /translation="MRTPRFRIQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI FT CRELHQTGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSYLD FT KDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN FT INSNLDRIFQEPPAPYVSPFPCSSFVQVPVEIEEWVADNVRDSAARPWRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNIAAWYNVIDDFDPHYLKHFKEFMGSQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLAEEKQEALKAWALKNAIFITLTEPLY FT SGSNQSHSQTSQEAGHPA" FT gene complement(2148..2570) FT /gene="AC4" FT CDS complement(2148..2570) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G3K022" FT /protein_id="AEO17920.1" FT /translation="MSFSHTQSVLYPKNTYCHSFKHSLSHQTLSSLKSVESCIRLGNLT FT YMPSSNSRVKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSPIWIRTETPSNGDNF FT RSMDDLLEAVNNQRMMLTPKRLTAAVSQKLLMSLGN" XX SQ Sequence 2781 BP; 750 A; 556 C; 683 G; 792 T; 0 other; accggttggc cccgcccccc ttaaagtggt ccccgcgcac tacgtatgtc ggccaatcat 60 gatgtagctt taaaggttat gtattagtgg tgggccacta tatacttgca ggcgaagttg 120 tggctagtgc gcaatgtggg atccactggt gaatgagttt ccagactcgg tgcatgggct 180 taggtgtatg cttgcaatta aatatttgca ggccttagag gatacatacg agcccagtac 240 tttgggccac gatctggtga gggatctagt ctcagttatc agggctcgta attatgtcga 300 agcgaccagg agatatcatc atttccactc caggctccaa ggttcgtcga agactgaact 360 tcgacagccc atacaggaac cgtgctactg cccccactgt ccacgtcaca aatcgaaaac 420 gggcctgggt gaacaggccc atgtacagaa agcccacgat gtacaggatg tatagaagcc 480 cagacatacc taggggctgt gaaggcccat gtaaggtcca gtcgtttgaa cagagggatg 540 atgtgaagca ccttggtatc tgtaaggtga ttagtgatgt gactcgtggg cctgggctga 600 cacacagggt cggaaagagg ttttgtatca agtccattta cattcttggt aagatctggc 660 tggatgaaac tattaagaag caaaatcaca ctaataatgt gattttttac ctgcttaggg 720 atagaaggcc ttatggcaat gcgccccaag actttgggca gatatttaac atgtttgata 780 atgagcccag tactgcaaca attaagaacg atttgaggga taggtttcag gtgttgagga 840 aatttcatgc cactgttgtt ggtggtccat atggcatgaa ggagcaggcg ttggtgaaaa 900 ggttttacag gttgaatcat cacgtgacat ataatcatca ggaggcaggg aagtatgaga 960 atcacacaga gaatgctttg cttctgtaca tggcatgtac tcatgcctcc aatcctgtat 1020 atgcgacgtt gaaaatacgt atatacttct atgacagtat tggcaattaa taaacattga 1080 attttatttc atgagtcaac ttgcactcaa tagtgttggc aattacattg aacaagacat 1140 gatcagcagc tctaattaca ttgttaattg agataacacc tatattatcc aagtatttaa 1200 ttacttggta tctaaagacc cttaagaaaa gaccagtctg aggctgtaag gtcgtccaga 1260 tcttgaagtt gagaaaacat ttgtgaatcc ccagctcctt cctcaggttg tgattgaatc 1320 gaacctggac tgttatgatg tcctggttca gcaggaatgg tcgttgttgg tgcttggtga 1380 ttgtgaaata caggggattg tttatttccc aggtatacac gccattcatt gcttgaggag 1440 cagtgatgag ttcccctgtg cgtaaatcca tgattgaagc agttgatatg gaggtaatat 1500 gaacatccac agacaagatc cactctccta cgccggatgg cccgcttctt gacttgtctg 1560 tgagtgactt tgattggaac ctgagtagag aggttctgtg agggtgatga agattgcatt 1620 ctttaatgcc caggccttta gcgcttcttg cttttcctcg gctaggaact ctttatagga 1680 cgaggtaggt cctggattgc agaggaagat agtgggaatt ccacctttaa tttgaacggg 1740 tttcccgtat ttcgtgttgg actgccagtc cctctgggac cccatgaatt ccttaaagtg 1800 ctttagatag tgcggatcga agtcatcaat gacgttgtac caggcagcaa tattgaagac 1860 ctttggacta aggtccaggt gtccacacag gtaattatgt gggcctaaag atctggccca 1920 tatcgtcttc cctgttctgc tatcaccttc tatgacaata ctattaggtc tccatggccg 1980 cgcagcggaa tccctaacat tatcagcgac ccattcttca atttcaacag gaacttggac 2040 aaaggaagaa catgggaagg gagaaacata aggagctggt ggctcctgga aaatcctatc 2100 taaattacta tttatattat gaaactgaag tacaaagtcc tttgggacta attccctaat 2160 gacattaaga gcttctgact tactgccgct gttaagcgct ttggcgtaag catcattcgc 2220 tgattgttga ccgcctctag cagatcgtcc atcgatctga aattgtcccc attcgacggt 2280 gtctccgtcc ttatccagat aggacttgac atctgagctt gatttggcac cttgaatgtt 2340 ggggtggaaa ctggtgctac agcttgggtg tacacaatcg aagagacgat tgttcgtaat 2400 cgtgatttta ccctcgaatt ggatgagggc atgtaagtga ggttccccag tctgatgcag 2460 ctctctacag attttaatga acttagggtt tgatgggaga gagagtgttt gaatgaatga 2520 cagtaggtgt tctttgggta tagaacactt tgggtatgtg agaaagacat tcttggcttg 2580 aattcgaaaa cgaggagttc tcatgttgac caagtcaatt ggagacactc tcaactggag 2640 acactcttga gcaagtcctc ctgttaattg gagacattat ataggtgtct ctaaatggca 2700 ttcttgtaat aagttgaact ttaatttgaa ttaaaaggct caaaaggctc agaacaccca 2760 aggggccaac cgtataatat t 2781 //