ID   JF911415; SV 1; linear; genomic DNA; STD; VRL; 1239 BP.
XX
AC   JF911415;
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DT   10-OCT-2011 (Rel. 110, Created)
DT   10-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE   Banana streak UL virus isolate Ug2 ORF III polyprotein gene, partial cds.
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KW   .
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OS   Banana streak UL virus
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN   [1]
RP   1-1239
RA   James A.P., Giejskes R.J., Harding R.M., Dale J.L., Karanja L., Mugini J.,
RA   Kubiriba J., Changa C.M., Tushemereirwe W.;
RT   "Surveying for banana viruses in East Africa and comparison of PCR and
RT   RCA-based methods for badnavirus detection";
RL   Unpublished.
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RN   [2]
RP   1-1239
RA   James A.P., Giejskes R.J., Harding R.M., Dale J.L., Karanja L., Mugini J.,
RA   Kubiriba J., Changa C.M., Tushemereirwe W.;
RT   ;
RL   Submitted (03-MAY-2011) to the INSDC.
RL   Centre for Tropical Crops and Biocommodities, Queensland University of
RL   Technology, 2 George St, Brisbane, Queensland 4001, Australia
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DR   MD5; 17d75aee32e72ee2661c08ddc2d547df.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1239
FT                   /organism="Banana streak UL virus"
FT                   /host="Musa sp. cv. Kibuzi"
FT                   /isolate="Ug2"
FT                   /mol_type="genomic DNA"
FT                   /country="Uganda"
FT                   /collection_date="08-Apr-2008"
FT                   /db_xref="taxon:1016856"
FT   CDS             <1..>1239
FT                   /codon_start=1
FT                   /product="ORF III polyprotein"
FT                   /note="contains reverse transcriptase and RNaseH"
FT                   /db_xref="GOA:G4XUP9"
FT                   /db_xref="InterPro:IPR000477"
FT                   /db_xref="InterPro:IPR002156"
FT                   /db_xref="InterPro:IPR012337"
FT                   /db_xref="UniProtKB/TrEMBL:G4XUP9"
FT                   /protein_id="AEP82809.1"
FT                   /translation="LLKRKVIRPSSSRHRTNAFIVNSGTTVDPLTKKEIKGKPRLVFNY
FT                   KRLNDNTEKDQYSLPGINGLLKSVGNAKIYSKFDLKSGFHQVAMEEESIEWTAFWAFTG
FT                   LYEWLVMPFGLKNAPAIFQRKMDNCFRGTEKFITVYIDDILVFSETEEEHAIHLTKMLE
FT                   ICKRNGLILSPTKMKIGVKVIDFLGSTIGQNQLDLQPHIVQKIVDFSEEKLKTKEGLKS
FT                   WLAILNYARGHIKNLGRTLGPLYPKTSEKGERSLNSEDWRIIRRMKQEVQKLPKLSIPP
FT                   QDAYIVIETDGSMNGWGGICCWKKSKNDPRSTEQICRYASGKFAKPKSTIEAEITGVLQ
FT                   SLEKFRLYYIDKAEITVRTDSSAIERFYNKSTEHKPSEVRWIHFMDVISGAGPEIKFEH
FT                   IKGKENTLADLLSR"
XX
SQ   Sequence 1239 BP; 482 A; 208 C; 262 G; 287 T; 0 other;
     ttactaaaga gaaaggtaat aagaccctca tccagtagac atagaacaaa tgccttcatt        60
     gtgaattcag gaacaacagt tgaccccctg acgaagaagg aaatcaaagg aaagccaaga       120
     ctagtattca actataaaag gttgaatgac aatactgaga aggatcagta ctctcttccc       180
     ggcataaatg ggctactaaa atcagtaggt aacgcaaaga tttattcaaa gtttgatctt       240
     aagagcggat ttcatcaagt agcaatggaa gaagaatcaa tcgaatggac agctttttgg       300
     gcgttcacag ggctatacga atggctagtc atgccatttg gactcaaaaa tgctccagca       360
     atcttccaga gaaaaatgga taactgcttc agaggtactg aaaaatttat tacggtttat       420
     attgatgata tcctggtttt ttcagaaact gaagaagaac atgcaatcca tctcacaaaa       480
     atgctggaaa tctgcaaaag aaatggatta atcctaagcc ctaccaagat gaagattgga       540
     gttaaagtaa ttgatttctt gggaagtaca attggacaaa accagctgga cttacaacca       600
     catattgtgc agaaaatagt agatttcagt gaagaaaagc tcaaaacaaa agaaggatta       660
     aagtcctggt tagcaattct gaattatgcc agaggacata tcaaaaattt gggaagaaca       720
     ctaggaccat tatatcccaa aacatcagaa aaaggagaga gaagtctgaa ttcagaagac       780
     tggaggatta taagaagaat gaagcaagag gtacaaaaac taccaaagct ttcaataccc       840
     ccgcaggatg cgtacatagt cattgagacg gatggttcaa tgaatgggtg gggaggaatt       900
     tgctgttgga agaaaagcaa aaatgatcca agaagtactg aacaaatctg caggtatgca       960
     agtggaaaat ttgcaaaacc aaaatccaca atcgaagcag aaatcacagg agtacttcaa      1020
     agcctggaaa aattcagatt atattacatt gacaaagctg aaatcacggt cagaactgac      1080
     agtagcgcaa tcgaaagatt ttacaataaa agcactgagc acaagccttc agaggtaaga      1140
     tggatacatt tcatggatgt catctctggt gcagggccag aaatcaagtt tgagcatatt      1200
     aaaggcaaag aaaatacatt ggctgatcta ttatcaaga                             1239
//