ID JF911415; SV 1; linear; genomic DNA; STD; VRL; 1239 BP. XX AC JF911415; XX DT 10-OCT-2011 (Rel. 110, Created) DT 10-OCT-2011 (Rel. 110, Last updated, Version 1) XX DE Banana streak UL virus isolate Ug2 ORF III polyprotein gene, partial cds. XX KW . XX OS Banana streak UL virus OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. XX RN [1] RP 1-1239 RA James A.P., Giejskes R.J., Harding R.M., Dale J.L., Karanja L., Mugini J., RA Kubiriba J., Changa C.M., Tushemereirwe W.; RT "Surveying for banana viruses in East Africa and comparison of PCR and RT RCA-based methods for badnavirus detection"; RL Unpublished. XX RN [2] RP 1-1239 RA James A.P., Giejskes R.J., Harding R.M., Dale J.L., Karanja L., Mugini J., RA Kubiriba J., Changa C.M., Tushemereirwe W.; RT ; RL Submitted (03-MAY-2011) to the INSDC. RL Centre for Tropical Crops and Biocommodities, Queensland University of RL Technology, 2 George St, Brisbane, Queensland 4001, Australia XX DR MD5; 17d75aee32e72ee2661c08ddc2d547df. XX FH Key Location/Qualifiers FH FT source 1..1239 FT /organism="Banana streak UL virus" FT /host="Musa sp. cv. Kibuzi" FT /isolate="Ug2" FT /mol_type="genomic DNA" FT /country="Uganda" FT /collection_date="08-Apr-2008" FT /db_xref="taxon:1016856" FT CDS <1..>1239 FT /codon_start=1 FT /product="ORF III polyprotein" FT /note="contains reverse transcriptase and RNaseH" FT /db_xref="GOA:G4XUP9" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR002156" FT /db_xref="UniProtKB/TrEMBL:G4XUP9" FT /protein_id="AEP82809.1" FT /translation="LLKRKVIRPSSSRHRTNAFIVNSGTTVDPLTKKEIKGKPRLVFNY FT KRLNDNTEKDQYSLPGINGLLKSVGNAKIYSKFDLKSGFHQVAMEEESIEWTAFWAFTG FT LYEWLVMPFGLKNAPAIFQRKMDNCFRGTEKFITVYIDDILVFSETEEEHAIHLTKMLE FT ICKRNGLILSPTKMKIGVKVIDFLGSTIGQNQLDLQPHIVQKIVDFSEEKLKTKEGLKS FT WLAILNYARGHIKNLGRTLGPLYPKTSEKGERSLNSEDWRIIRRMKQEVQKLPKLSIPP FT QDAYIVIETDGSMNGWGGICCWKKSKNDPRSTEQICRYASGKFAKPKSTIEAEITGVLQ FT SLEKFRLYYIDKAEITVRTDSSAIERFYNKSTEHKPSEVRWIHFMDVISGAGPEIKFEH FT IKGKENTLADLLSR" XX SQ Sequence 1239 BP; 482 A; 208 C; 262 G; 287 T; 0 other; ttactaaaga gaaaggtaat aagaccctca tccagtagac atagaacaaa tgccttcatt 60 gtgaattcag gaacaacagt tgaccccctg acgaagaagg aaatcaaagg aaagccaaga 120 ctagtattca actataaaag gttgaatgac aatactgaga aggatcagta ctctcttccc 180 ggcataaatg ggctactaaa atcagtaggt aacgcaaaga tttattcaaa gtttgatctt 240 aagagcggat ttcatcaagt agcaatggaa gaagaatcaa tcgaatggac agctttttgg 300 gcgttcacag ggctatacga atggctagtc atgccatttg gactcaaaaa tgctccagca 360 atcttccaga gaaaaatgga taactgcttc agaggtactg aaaaatttat tacggtttat 420 attgatgata tcctggtttt ttcagaaact gaagaagaac atgcaatcca tctcacaaaa 480 atgctggaaa tctgcaaaag aaatggatta atcctaagcc ctaccaagat gaagattgga 540 gttaaagtaa ttgatttctt gggaagtaca attggacaaa accagctgga cttacaacca 600 catattgtgc agaaaatagt agatttcagt gaagaaaagc tcaaaacaaa agaaggatta 660 aagtcctggt tagcaattct gaattatgcc agaggacata tcaaaaattt gggaagaaca 720 ctaggaccat tatatcccaa aacatcagaa aaaggagaga gaagtctgaa ttcagaagac 780 tggaggatta taagaagaat gaagcaagag gtacaaaaac taccaaagct ttcaataccc 840 ccgcaggatg cgtacatagt cattgagacg gatggttcaa tgaatgggtg gggaggaatt 900 tgctgttgga agaaaagcaa aaatgatcca agaagtactg aacaaatctg caggtatgca 960 agtggaaaat ttgcaaaacc aaaatccaca atcgaagcag aaatcacagg agtacttcaa 1020 agcctggaaa aattcagatt atattacatt gacaaagctg aaatcacggt cagaactgac 1080 agtagcgcaa tcgaaagatt ttacaataaa agcactgagc acaagccttc agaggtaaga 1140 tggatacatt tcatggatgt catctctggt gcagggccag aaatcaagtt tgagcatatt 1200 aaaggcaaag aaaatacatt ggctgatcta ttatcaaga 1239 //