ID JF909150; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909150; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate Comoros:Moheli:MO30BY1:2009 DE segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 28341728df35736715b77ed40590f9f5. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Moheli:MO30BY1:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Moheli" FT /lat_lon="12.35 S 43.67 E" FT /collection_date="2009" FT /db_xref="taxon:1229189" FT gene 174..539 FT /gene="AV2" FT CDS 174..539 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LYH7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LYH7" FT /protein_id="AEG90234.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPVHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCPEGL" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LX52" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LX52" FT /protein_id="AEG90233.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LYI0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LYI0" FT /protein_id="AEG90237.1" FT /translation="MDSRTGELITAPQARNGVFTWEITNPLYFEITNHDRRPGNMNHDI FT IILQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVLYDVLLYTLQVTDQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LYH9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LYH9" FT /protein_id="AEG90236.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRIDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTLQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LYH8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LYH8" FT /protein_id="AEG90235.1" FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPRHIKFIR FT ICRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQNYVSPFLSSSFTQVPEEIEVWVSENICGPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKAFLDEEKNQSLKTWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LYI1" FT /protein_id="AEG90238.1" FT /translation="MGCLISMFSSSSKGSSNVPTHDSSISFPHPDPHISIRTFRELNHR FT PMSKLILKREGNFLTMEFSKSMPEVQGGRASI" XX SQ Sequence 2801 BP; 733 A; 561 C; 710 G; 797 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacca gatggccgcg cccgtgaagg 60 aaagtggtcc ccgcgcacat gttttggtcg gccaattata ttcacgcgtg aaagtctaga 120 tattcgtggt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaatgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc gtacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtcccgaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg ttaaacacac tggtatggtc 600 cgctgtgtca gtgatgttac tcgtgggtca ggcatcaccc atagagttgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gtttttcctc gttcgagata gaaggcctta tggtccgagc 780 ccacaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgtgggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcgaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa agattgaatt ttattgcatg ttgatccgta 1140 acttggagtg tgtatagtaa tacatcgtac agaacatgat caacagcttg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gaggttgtgg ttgaagcgta tctggagtat gatgatgtcg 1380 tggttcatgt tccctggcct cctgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attccttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctat 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcactag 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gttttaaggg 1680 actggttctt ttcctcgtcc agaaacgctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaatgggctt cccgtacttt gtattgcttt 1800 gccagtctct ttgggccccc atgaattctt tgaaatgctt tagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagcgaac gagcccacat ggttttccct gttcggctat 1980 caccttctag aacaatactt atcggtctcc atggccgcgc agcgggaccg catatatttt 2040 ccgataccca tacttctatt tcttcgggga cttgtgtaaa tgaggatgat aagaacggac 2100 taacataatt ttggggcgga gcctggaaga ttctatccgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggatttt ggatcttttt ctttaataat ctgaagagct tctgttttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccttgcac 2280 ttctggcatc gacttggaaa attccatcgt caagaaattc ccctcccttt tcaatataag 2340 ctttgacatc ggacgatgat ttagctccct gaatgttcgg atggaaatgt gtggatctgg 2400 atgtggaaat gagatcgaag aatcgtgggt tggtacattg gaacttccct tcgaactgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tcggcaaatt ctaatgaatt 2520 tgatatgcct cgggtaagaa agggctttta attgggaaag tgcctcttcc tttgttaatg 2580 agcatcgggg ataggtgatg aaataatttc tggcatttat ttgaaaacga ccggctctcg 2640 gcatatttgc tgtcgttttg tatcggtgga cactcaaaac tccaggggaa cggtggaacg 2700 gtggacatta tataggatgt cccccaatgg catatgtgta aataggtaga cttccattta 2760 aaatttgaat tccgcatatt tgcggccatc cgattaatat t 2801 //