ID JF909076; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909076; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Anjouan:AJ29BE2:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 36bfd51302d96e92d416056c1f4ae6d6. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Anjouan:AJ29BE2:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Anjouan" FT /lat_lon="12.19 S 44.51 E" FT /collection_date="2009" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LX83" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LX83" FT /protein_id="AEG89790.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEDVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LX82" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LX82" FT /protein_id="AEG89789.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKVYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLWYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LX86" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LX86" FT /protein_id="AEG89793.1" FT /translation="MDSRTGALITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VITAVAHVLYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LX85" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LX85" FT /protein_id="AEG89792.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQAAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LX84" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LX84" FT /protein_id="AEG89791.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTMEEAISQLKALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEDIEVWVSENICSPAARPWRPVSIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVTLHEPL FT FSSAHQSPTPHSEDQGPQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LX87" FT /protein_id="AEG89794.1" FT /translation="MGCLISMFLSNSKASSNVQTRDSSISFPRPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTMEFSRSMPEVHGGRASI" XX SQ Sequence 2801 BP; 735 A; 560 C; 729 G; 777 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccaccg gatggccgcg cccgtgaaag 60 atagtggtcc ccgcgcacgt gtttcggtcg gccagtcata tttacgcgtg aaagactaga 120 tatttgttgt ttgtctgtat agacttcgtc gcgaagtagt gaagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cctgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc cgaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc gtatgaacag agggatgatg ttaagcacac gggtatggtt 600 cgatgtgtca gtgatgttac tcgtgggtca ggcatcaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggcctta tggtccgagc 780 ccgcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaacggta 840 aagaatgatc tgagggaccg gtatcaggtg ttacgaaaag tctatgcgac cgttgttggt 900 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atacggaaaa tgcgttgtta 1020 tggtatatgg catgtacaca tgcctcaaat cctgtgtacg ctactctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacatcgtac agaacatgag caacagctgt aattacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcgcca atgccttccg gaggttgtgg ttgaaacgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggccg cttgtcgtgg ttggtgatgt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagtgc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt cgaggtctac 1560 ccgcctacgt ctgagggccc tggtcttcgc tgtgcggtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtggagg gtgacgaagg tggcattctt taaagcccag gctttaaggg 1680 actgattctt ttcctcgtcc agaaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgctt tagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggtttttccg gttcggctat 1980 caccttcgag aacaatactg accggtcgcc atggccgcgc agcgggactg catatatttt 2040 ctgataccca tacctctatg tcttcgggaa cgtgtgtaaa tgatgatgat aagaacggac 2100 taacgtaagt ttgtggcgga gcctggaaga ttcgatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttg ggatcttttt ctttaataat ttgaagagct tcggatttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccgtgcac 2280 ttctggcatc gacctggaaa attccatcgt caagaaattc ccctcccttt tcaatgtaag 2340 ctttgacatc ggacgatgat ttagctccct gaatgttcgg atggaaatgt gttgatctgg 2400 acggggaaat gagatcgaag aatctctggt ttgtacattg gaacttgcct tcgaattgga 2460 taagaacatg gagatgaggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa agggctttta attgggaaat ggcctcttcc atggttaatg 2580 agcatcgggg ataggtgatg aaataatttt tggcatttat ttgaaaacga ccggctcttg 2640 gcatatttgc tgtcgtttgg gatcggtgga cactcaaaac tccaggggaa tggtggaacg 2700 gtgggcatta tatatgatgt cccccaatgg catatgtgta aataggtgaa cctccattca 2760 aatttcgaaa tgcgaatatt ggcggccatc cgattaatat t 2801 //