ID JF502371; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC JF502371; XX DT 29-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Burewala virus isolate In:Hissar2:2010 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2759 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2759 RA Katturi P., Naik A.S., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 959e04d33669c4b9c721e82104995534. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Cotton leaf curl Burewala virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Hissar2:2010" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="15-Sep-2010" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:620894" FT gene 132..488 FT /gene="V2" FT CDS 132..488 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:H6B917" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6B917" FT /protein_id="AFB83485.1" FT /translation="MWDPLLNEFPDTVHGLRCMLAVKYLQLVKKTYSPDTLGCDLTRDL FT IRVITARNYVETTSKYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT gene complement(283..807) FT /gene="C5" FT CDS complement(283..807) FT /codon_start=1 FT /gene="C5" FT /product="C5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:H6B918" FT /protein_id="AFB83491.1" FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISNQEKHHTIRVILR FT LNVLIHPDLTQHINRLNTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF FT TSSRNIWTSVHPVHPGLSVHGLVRPCFCFGDADNGGSSTAHIWAVEVETAAYLRSARGN FT DYICLSFRHNS" FT gene 292..1062 FT /gene="V1" FT CDS 292..1062 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B919" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B919" FT /protein_id="AFB83486.1" FT /translation="MSKRQANIIISTRASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NKPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGHSASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1059..1463) FT /gene="C3" FT CDS complement(1059..1463) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIR1" FT /protein_id="AFB83488.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT gene complement(1204..1608) FT /gene="C2" FT CDS complement(1204..1608) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B921" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B921" FT /protein_id="AFB83487.1" FT /translation="MQSSPLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGSSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP FT EESVGDTQMFHSFPNLDDLTASDWSFLKGL" FT gene complement(1505..2596) FT /gene="C1" FT CDS complement(1505..2596) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B922" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B922" FT /protein_id="AFB83489.1" FT /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTGSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGARRDW FT QSNTKYGKPVQIKGGIPKVFLCNPGPNSSYTEFLNEEKNTALKNWALKNAIFTTLEGPL FT YSASNQSTAQGSEETQQEEESRS" FT gene complement(2137..2682) FT /gene="C4" FT CDS complement(2137..2682) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6B923" FT /protein_id="AFB83490.1" FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS FT LIHNAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSAQITDS FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFRSMEDQQEEDSRQPTTLT FT PQHLTQAVSQRLLESLRN" XX SQ Sequence 2759 BP; 715 A; 548 C; 653 G; 843 T; 0 other; accggatggc cgcgcgattt tttcgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcctattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtctta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtaaagaa aacttactct cctgatacat 240 tgggttgcga tttgactagg gatttaatcc gggtaataac ggctaggaat tatgtcgaaa 300 cgacaagcaa atataatcat ttccacgcgc gcttcgaagg tacgccgccg tctcaacttc 360 gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca agcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg gaaatggtat 840 gcaacggtca ccggtggaca ttctgcttca aaggaacaag ctctcgtgaa gaaatttatt 900 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt 1080 gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact 1140 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt tagcacttga 1200 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa 1260 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctggatcctg 1320 atcgtgagta tatccatatt cgtcgtgaat ggacggttga cgtggctgat gatcttgaaa 1380 tagaggggat ttggaacttc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg 1440 ggttcccctg tgcgtgaatc catggttgtg gcagttgatt gacagataat aagaacaccc 1500 gcattcaaga tctactctcc tcctcctgtt gcgtctcttc gcttccctgt gctgtacttt 1560 gattggaagc tgagtacagt ggtccttcga gagtggtgaa gattgcattt tttaaggccc 1620 aattctttaa tgctgtgttt ttttcctcgt tgaggaattc cgtataactg ctgttcggac 1680 caggattgca caggaagact ttcggtatcc cgcctttaat ttgaactggc tttccgtatt 1740 ttgtgttgga ctgccagtct cttcgggccc ccatgaactc tttaaagtgt ttgaggaaat 1800 gcgggtcgac gtcatcaatg acgttgtacc aggcgtcgtt actgtatact ttgggactca 1860 ggtctagatg tccgcacaaa tagttatgtg gtcccaatga tctagcccac atcgtcttcc 1920 ccgttcgact atctccctca attactatac tccgaggtct aaggggccgc gcagcggcat 1980 cgacaacgtt atcgatggcc caaacttcaa gttcttctgg aacttgatcg aaagaagaag 2040 gagaaaaagg agaaatatag ggagccggtg gctcctgaaa gattctgtct agatttgcat 2100 ttaaattatg aaattgtagt acaaaatctt taggagctag ttccttaatg actctaagag 2160 cctctgactt actgcctgcg ttaagtgctg cggcgtaagc gtcgttggct gtctgctgtc 2220 ctcctcttgc tgatcttcca tcgatctgaa actctcccca ctcgagagtg tccccgtcct 2280 tgtcgatgta ggccttgaca tctgagcttg atttagctcc ctgaatgttc ggatggaaat 2340 gtgctgaccc ggttggggat accaggtcga agaatctgtt atttgtgcag acgaatttgc 2400 cctcgaactg gatgagcaca tggagatgag ggctcccatc ttcgtgtaac tctctgcaga 2460 gtttgatgta ttttttattc gagggtgtgt tgatggcttg aatttgggaa agtgcttcct 2520 ctttagtgag tgagcattgt ggataagtga tgaaataatt tttggcttgt actttaaaac 2580 gtttgggggg agccattgac tttggtcaat tagagacaac tgatgggctt ttactctggg 2640 aattggagac tggatacaat ttatagtgtc tccaaatggc atattctgta tttaactaga 2700 aggtcgtttg aaattcaaat tcccctttag ggtccaaaag cggccatccg tataatatt 2759 //