ID JF502358; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC JF502358; XX DT 28-FEB-2012 (Rel. 111, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus isolate In:Bathinda:2005 segment DNA A, DE complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2737 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2737 RA Katturi P., Naik A.S., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.; RT ; RL Submitted (05-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna - RL Aurangabad road, Jalna, Maharashtra 431 203, India XX DR MD5; 275e649cce3416a597302c037f71c9c1. XX FH Key Location/Qualifiers FH FT source 1..2737 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:Bathinda:2005" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="20-Sep-2005" FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569, FT rev_name: CBVs-V1Rev-528-494" FT /db_xref="taxon:223259" FT gene 116..481 FT /gene="V2" FT CDS 116..481 FT /codon_start=1 FT /gene="V2" FT /product="pre coat protein" FT /db_xref="GOA:B9TVF5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B9TVF5" FT /protein_id="AFB81499.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 276..1046 FT /gene="V1" FT CDS 276..1046 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H6B8T9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6B8T9" FT /protein_id="AFB81500.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTRDHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT KLTAVKKSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVEVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1049..1453) FT /gene="C3" FT CDS complement(1049..1453) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6B8U0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6B8U0" FT /protein_id="AFB81503.1" FT /translation="MDSHTGEPIPAAQAGNRAYIWKVPNPLYFQIISHVNRPFTKNGTI FT LTIKAQFQPNTREILGLHKFFLTLQIWTTLSLQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1146..1598) FT /gene="C2" FT CDS complement(1146..1598) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H6B8U1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6B8U1" FT /protein_id="AFB81502.1" FT /translation="MRSSSHLIDPPIQVPIKVQHREAKRRNRRRRVDFECGCSYYLFIN FT RHTHGFTHRGANPCSPSREPRIYLEGSKSPLFPNHQPRQPSFHEEWDNTHNQGPVSTQH FT SGNSGTAQVFLNPSNLDDLKPPDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1495..2580) FT /gene="C1" FT CDS complement(1495..2580) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H6B8U2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6B8U2" FT /protein_id="AFB81501.1" FT /translation="MPPKRNGFYCKNYFLPYLKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYISPFSSSSFDQVPEELEEWVSENVVDAAARPNRPQSIVIEGNS FT RTGKTMWARSLGPHNFLCEHLDLSPKVYSNDAWYNVIDVDPHFLKHFKEFMGAQRDWRA FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNPSLKNWAVKNAIFITLDRPPYS FT GTNQSTAQGSEEAQQEEESRF" FT gene complement(2124..2426) FT /gene="C4" FT CDS complement(2124..2426) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B9TVG0" FT /protein_id="AFB81504.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2737 BP; 721 A; 543 C; 635 G; 838 T; 0 other; accggatggc cgcgcgattt ttttgtgggc ccccgattta tgagattgct ccctcaaagc 60 taaataacgc tcccgcacac tataagtact tgcgcactaa gtttcaaatt caaacatgtg 120 ggatccacta ttaaacgaat tccctgatac ggttcatggg tttcggtgta tgctttctgt 180 gaaatatttg caacttttgt cgcaggatta ttcaccggat acgcttgggt acgagttaat 240 acgggattta atttgtattt tacgctcccg taattatgtc gaagcgagct gccgatatcg 300 tcatttctac gcccgcgtcg aaagtacgcc ggcgtctgaa cttcggcagc ccatacacca 360 gccgtgctgc tgcccccatt gtccgcgtca caaaacaaca ggcatggaca aacaggccta 420 tgaacaggaa gcccagaatg tatcggatgt acagaagtcc ggatgttcca aagggttgtg 480 aagggccatg taaggttcag tcttttgagt cgagacatga tgtcgttcat attggtaagg 540 taatgtgtat ttctgatgtt actcgtggtg tcggtttgac ccatcgtatt ggtaaacgtt 600 tttgtgtcaa gtcagtttat gttttaggta agatatggat ggatgaaaat ataaagacca 660 gagaccacac gaattcggtg atgttctttt tagtccgcga tcgacgtcct gttgacaaac 720 ctcaggattt tggtgaggta tttaatatgt ttgacaatga acccaagtta acagccgtga 780 agaaaagtca tagggaccgt taccaggtgt tgaggaaatg gcatgcaacc gttacgggtg 840 gtcaatatgc atcgaaggaa caagctttgg tcaagaagtt tgttgaagtt aacaattatg 900 ttgtttacaa tcaacaggaa gcaggaaaat acgagaatca tacggaaaat gcgttaatgc 960 tttatatggc ttgtactcac gctagcaacc ctgtttatgc tacgttgaag attaggatat 1020 atttttatga ctctgtaacg aattgatatt aatgaagttt gaattttatt tctgaatatt 1080 gatctacata catagtttgt tggattacat tgtacaatac atgttctaca gctttaataa 1140 ctaaattaat tgaaattaca ccgagattgt tcagatattt gaggacttgg gttttgaata 1200 cccttaagaa aagaccagtc tggaggctta aggtcgtcca gatttgaagg gttaagaaaa 1260 acttgtgcag tcccagaatt tcccgagtgt tgggttgaaa ctgggccttg attgtgagta 1320 ttgtcccatt cttcgtgaaa ggacggttga cgtggctgat gatttggaaa taaaggggat 1380 ttggaacctt ccagatatat gcgcggttcc ctgcttgggc tgcagggatt ggctcccctg 1440 tgtgtgaatc catgtgtgtg gcggttgata aacagataat aagaacaccc gcattcaaaa 1500 tctactctcc tcctcctgtt gcgcctcttc gcttccctgt gctgtacttt gattggtacc 1560 tgaatagggg ggtctatcaa gtgtgatgaa gatcgcattc tttactgccc agttttttag 1620 agaggggttc ttttcctcgt ctaggaattc tttataactg ctgtttggac caggattgca 1680 caggaagatt gttggtatcc cgcctttaat ttgaactggc ttcccgtact ttgtgtttgc 1740 tcgccagtcc ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat gtgggtcgac 1800 atcaatgaca ttataccagg cgtcgttact gtaaaccttg ggactcaggt ccaaatgttc 1860 acacaaaaag ttatgtggtc ccaatgacct agcccacatc gtcttccccg tacgactatt 1920 tccttcaatc actatacttt gaggtctgtt tggccgcgca gcggcatcga caacgttttc 1980 ggagacccac tcttcaagtt cttctggaac ttgatcgaaa gaagaagaag aaaaaggaga 2040 aatataggga gccggtggct cctgaaagat tctgtctaga tttgcattta aattatgaaa 2100 ttgtagtaca aaatctttag gagctagttc cttaatgact ctaagagcct ctgacttact 2160 gcctgcgtta agtgctgcgg cgtaagcgtc attggctgtc tgttgccctc ctcttgctga 2220 ccttccgtcg atctgaaatt gcccccagtc gagaatgtcc ccgtccttct cgatgtagga 2280 tttgacgtcg gagctggatt tagctccctg tatgttcgga tggaaatgtg ctgacctgct 2340 tggggagacc aagtcgaaga atcgcatatt ctggcacttg aatttccctt cgaactggat 2400 gagaacatgc aagtgaggag tcccatcttc gtgaagctct ctgcagattc taatatattt 2460 ttttgaagtt ggggtttgta tatttaataa ttgggaaagt gcttcctctt tggtgagaga 2520 acatttgaga taagggagga aataattctt gcaataaaaa ccgttccgct ttggaggcat 2580 gttgactaaa attgatcacc gattgaccgc tcttgcaact ctccctggta tatcggtgat 2640 caatatatag tgatcaccaa atggcataat ggtaataaaa aaactttaat tttgaaattc 2700 aaaccaaaag gctaaagccg tccattcgtt taatatt 2737 //