ID HQ009522; SV 1; circular; genomic DNA; STD; VRL; 2608 BP. XX AC HQ009522; XX DT 13-DEC-2010 (Rel. 107, Created) DT 02-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Sida golden mosaic Liguanea virus-[Jamaica:1:2008] clone pLigA1 segment DE DNA-A, complete sequence. XX KW . XX OS Sida golden mosaic Liguanea virus-[Jamaica:1:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2608 RX DOI; 10.1007/s00705-011-1030-z. RX PUBMED; 21625977. RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.; RT "First report of the complete sequence of Sida golden yellow vein virus RT from Jamaica"; RL Arch. Virol. 156(8):1481-1484(2011). XX RN [2] RP 1-2608 RA Stewart C.S., Kon T., Gilbertson B.L., Roye M.E.; RT ; RL Submitted (03-AUG-2010) to the INSDC. RL The Biotechnology Centre, The University of the West Indies, Mona Road, RL Mona, St. Andrew Kgn 7, Jamaica XX DR MD5; 4c7a3766d5aed7cbc9b0568442f57957. DR EuropePMC; PMC3081322; 21544196. XX FH Key Location/Qualifiers FH FT source 1..2608 FT /organism="Sida golden mosaic Liguanea FT virus-[Jamaica:1:2008]" FT /segment="DNA-A" FT /host="Sida sp." FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2008" FT /clone="pLigA1" FT /db_xref="taxon:929768" FT misc_feature 15..2461 FT /note="IR; contains sequences essential to the initiation FT of replication" FT gene 183..938 FT /gene="CP" FT CDS 183..938 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /function="viral encapsidation" FT /db_xref="GOA:E5KC01" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5KC01" FT /protein_id="ADR77531.1" FT /translation="MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY FT RKPLIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI FT KNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(935..1333) FT /gene="REn" FT CDS complement(935..1333) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer" FT /function="enhances replication" FT /db_xref="GOA:E5KC02" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5KC02" FT /protein_id="ADR77534.1" FT /translation="MDSRAGELITARQAENGVYIWEIENPLYFKIYWIEDQLHTRTRVY FT HIQIRFNHNLRRALGLHKAYLNFQVWTTSMTASGLTYLTRFRQLVNEYLYQLGVIGINN FT VIRAVRFATAKPYVTHVLENHEIKFKFY" FT gene complement(1080..1544) FT /gene="TrAP" FT CDS complement(1080..1544) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /function="may act as a gene silencing suppressor" FT /db_xref="GOA:E5KC03" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5KC03" FT /protein_id="ADR77533.1" FT /translation="MVRVPAIKNSWTKLKTQLSGTGPTRTLSSSPSQPPSIKKAHRQAK FT RRAIRRRRIDLECGCSIYFHINCTGHGFTRRGTHHCTSGREWRIYLGDRKSPVFQDILD FT RGPATHQDQSVPHTNQIQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFN" FT gene complement(1381..2466) FT /gene="Rep" FT CDS complement(1381..2466) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /function="essential for viral replication" FT /db_xref="GOA:E5KC04" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5KC04" FT /protein_id="ADR77532.1" FT /translation="MPSVKHFRINAKNFFLTYADCSLSKEEALSQLQNINTPVNQKFIK FT ICREFHKNGNPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT NKDGDTLEWGEFQIDGRSARGGCQSANDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANAHRIFTKAPEPWVPPFPLSSFTAVPDEMQDWADEYFGRGAAARPERPVSIIVEG FT DSRTGKTMWARSLGPHNYLSGHLDFNSRVFSNEVEYNVIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKAENSALRNWTNKNAIFITLT FT APLYQEGTQASQEAGNQETQD" FT gene complement(2052..2309) FT /gene="AC4" FT CDS complement(2052..2309) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /function="may act as a gene silencing suppressor" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5KC05" FT /protein_id="ADR77535.1" FT /translation="MGILISTCSYSLKENTSARITDSSIWSPQPGQHISIQTYRELNPA FT PTSSPTSTRTATHWNGGNSRSTGEVLEEAANRLTTHMPRR" XX SQ Sequence 2608 BP; 624 A; 595 C; 622 G; 767 T; 0 other; accggatggc cgcgcgattt ttccgccttt tactttccac gcgcgctccg cttttctcac 60 tcgcgctatc gtccaatcat attgcgtctg ccgcgcctaa ttaattcaaa caacttgggc 120 cctaagttgt tgtctgggcc tatataggaa aagcgggttt gggccatagt ctttaattca 180 aaatgactaa gcgcgattcg tcttggcgct cgattgctgg aacctcaaag gttcgtcgca 240 cgttgaattt ctccccacgt ggaggtggtg gcccaaaaca gacaagggcc tcagaatggg 300 ttaacaggcc tatgtacagg aagcccttga tctatcggac tctacggacg cccgacgttc 360 ccagaggttg cgaaggcccg tgcaaggtcc agtcctatga acagcgtcat gatatctccc 420 acgtcggcaa ggtgatgtgt atttctgatg tcactcgtgg taatggcatt acccaccgtg 480 tgggtaagcg tttttgtgta aagtctgtgt atattttagg gaagatatgg atggatgaga 540 acattaagct caagaaccat acgaacagcg tcatgttctg gttggtcaga gaccgacgac 600 cctatggcac cccaatggat tttggccagg tgttcaacat gtatgataac gagcctagca 660 ccgccacgat taagaacgat ctccgtgatc gttatcaggt tatgcacagg ttctatggca 720 aggtcactgg tggtcaatat gccagcaacg agcaggcgtt ggttaggcga ttctggaagg 780 tcaacaatca tgtggtctac aaccaccaag aggctgggaa atatgagaat cacactgaga 840 acgctttatt attgtacatg gcatgtactc atgcttcaaa ccccgtgtat gcaacattga 900 aaattcgaat ctatttttat gattcgataa caaattaata aaatttaaat tttatttcat 960 gattctcaag cacatgagtt acatatggtt tggctgttgc aaaacgaaca gctctaatta 1020 cattgtttat cccaattaca cctaattggt acaggtactc attaactaat tgtctaaatc 1080 tagttaaata agttaaccca gaagctgtca tcgatgtcgt ccagacttgg aagttcaggt 1140 aggctttgtg gagacccaac gctctcctca ggttgtggtt gaatctgatt tgtatgtggt 1200 acactctggt cctggtgtgt agctggtcct ctatccagta tatcttgaaa tacaggggat 1260 tttctatctc ccagatatat acgccattct ctgcctgacg tgcagtgatg agttcccctg 1320 cgcgtgaatc catgtcccgt gcagttgatg tggaagtata tggagcaccc gcactctaga 1380 tcaatcctgc gtctcctgat tgcccgcctc ttggcttgcc tgtgtgcctt cttgatagag 1440 gggggctgtg agggtgatga agatagcgtt cttgttggtc cagttcctga gagctgagtt 1500 ttcagctttg tccaggaatt ctttatagct ggcaccctca ccaggattgc aaagtacgat 1560 tgatgggatc cctcctttaa tttggactgg cttgccgtac ttgcaatttg actgccagtc 1620 cttctgggcc cccagaagtt ctttccagtg ctttagcttt agatattgcg gtgcgacgtc 1680 atcaatgacg ttatattcca cttcgtttga aaagacccgg gaattgaagt ctaggtgtcc 1740 actgagataa ttatgtgggc ctaacgaccg agcccacatc gtcttccctg tcctcgagtc 1800 accttctact atgatactca caggcctctc tggccgcgca gcggcacctc ttccaaaata 1860 ctcatcggcc cagtcttgca tctcgtccgg aacggcagtg aaagaggaga ggggaaacgg 1920 aggtacccat ggttccggag ccttagtgaa aatccgatga gcattggcaa ccaaattgtg 1980 atgttgaagg aagaaatgtt gaggctgctc ctccttgatt atttgcagag cctcttctgc 2040 agaagaggca ttcaacgcct tggcatatgt gtcgttagcc gattggcagc ctcctctagc 2100 acttctcccg tcgatctgga attcccccca ttccagtgtg tcgccgtcct tgttgatgta 2160 ggacttgacg tcggagctgg atttagctcc ctgtatgttt ggatggaaat gtgctgacct 2220 ggttggggag accagatcga agaatctgtt attcgtgcac tggtattttc cttcaaactg 2280 tatgagcacg tggagatgag gattcccatt cttgtgaaat tctctgcaga tcttgatgaa 2340 cttttgattt actggagtat taatgttttg taactgtgat agtgcttcct ctttgcttag 2400 ggagcaatct gcataagtga ggaaaaagtt tttggcattt attctgaaat gtttaaccga 2460 tggcattttg taatatgaag ggtgtacacc gattgagctc tctcaaactt gctcattcaa 2520 tcggtgtaac ggtgtataat ttatactaga accctcaata gaactctcaa tctcgttcac 2580 acacgtggcg gccatccgct ataatatt 2608 //