ID HM777508; SV 1; circular; genomic DNA; STD; VRL; 2727 BP. XX AC HM777508; XX DT 29-DEC-2010 (Rel. 107, Created) DT 21-JUN-2011 (Rel. 109, Last updated, Version 3) XX DE Rhynchosia yellow mosaic India virus clone JRH1 segment DNA-A, complete DE sequence. XX KW . XX OS Rhynchosia yellow mosaic India virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2727 RX DOI; 10.1007/s11262-011-0580-1. RX PUBMED; 21318241. RA Jyothsna P., Rawat R., Malathi V.G.; RT "Molecular characterization of a new begomovirus infecting a leguminous RT weed Rhynchosia minima in India"; RL Virus Genes 42(3):407-414(2011). XX RN [2] RP 1-2727 RA Jyothsna P., Malathi V.G.; RT ; RL Submitted (19-JUL-2010) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Campus, New Delhi, Delhi 110012, India XX DR MD5; 53afe29859b5ff41327d03c91eb0e4ee. XX FH Key Location/Qualifiers FH FT source 1..2727 FT /organism="Rhynchosia yellow mosaic India virus" FT /segment="DNA-A" FT /host="Rhynchosia" FT /isolate="Thiruvananthapuram" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Oct-2009" FT /clone="JRH1" FT /note="acronym: RhYMIV" FT /db_xref="taxon:935473" FT gene 130..489 FT /gene="AV2" FT CDS 130..489 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7CWL1" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:E7CWL1" FT /protein_id="ADU02156.1" FT /translation="MIKMWDPLLNDFPKSRHGFRCMIAIKFLQACQEQYPNNSLGFEFL FT RKLISNLRSKDHAKAELRYRLLITAISSSSKIELRQPNGTTCTCIQCPRHNKEKALDES FT SDVEETTFLSIVSDT" FT gene complement(222..515) FT /gene="AC5" FT CDS complement(222..515) FT /codon_start=1 FT /gene="AC5" FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:E7CWL2" FT /protein_id="ADU02161.1" FT /translation="MDLHNHVEHQVSDTIDKNVVSSTSDDSSNAFSLLCLGHWMQVQVV FT PLGCRSSIFDELLIAVMRRRYRNSALAWSLERKFEMSLRKNSNPNELLGYCS" FT gene 299..1072 FT /gene="AV1" FT CDS 299..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7CWL3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7CWL3" FT /protein_id="ADU02157.1" FT /translation="MPKRNYDTAFSSPLSVVRRRLNFDSPMALPAPASSAQGTTRRRRW FT TNRPMWRKPRFYRLYRTPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITH FT RVGKRFCVKSVYITGKVWMDENIKSKNHTNTVMFKLCRDRRPFGTPMDFGQVFNMYDNE FT PSTATVKNDLRDRFQVLRRFNATVTGGQYACKEQAMVNRFYRVNNHVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVGN" FT gene complement(1187..1471) FT /gene="AC3" FT misc_feature complement(1187..1471) FT /gene="AC3" FT /note="similar to replication enhancer protein; REn" FT gene complement(1212..1619) FT /gene="AC2" FT CDS complement(1212..1619) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="TrAP" FT /db_xref="GOA:E7CWL4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7CWL4" FT /protein_id="ADU02159.1" FT /translation="MRNSTPSKNHFSPPSIKAQHRCAKKKAIRRKRIDLKCGCSYYMHI FT NCANHGFTHRGEHHCNSSTEWRIYLGDKKSPIFQDPRASQETVQQQQRHFDCPDQIQPQ FT LKEGTGDSQMFFDLQNLDDLTASDWSFLKDI" FT gene complement(1519..2607) FT /gene="AC1" FT CDS complement(1519..2607) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiation protein" FT /note="Rep" FT /db_xref="GOA:E7CWL5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7CWL5" FT /protein_id="ADU02158.1" FT /translation="MANSSRFKINAKNYFLTYPRCTLSKEAALEQLLAISTPVNKKFIR FT ICRELHEDGIPHLHVLLQFEGKFQCKNQRFFDLHAETRSTYFHPNIQGAKSSSDVKKYM FT EKDGDVVDHGEFQIDGRSSRGGKQSANDAYAEAINAGNTSEALVILKEKAPKDFVLYFH FT NLAKNFDKIFEKSVPVYEPRYSIESFDNVPPYISSWAERNVKDSAARPERPISIVIEGD FT SRTGKTTWARALGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTMIKGGIPTIFLCNPGNKSSYKEFLDEEANASLKLWASKNAEFYTIKEPF FT FTTVNQSATQVRQEESNSTQTN" FT gene complement(2157..2456) FT /gene="AC4" FT CDS complement(2157..2456) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="unknown" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7CWL6" FT /protein_id="ADU02160.1" FT /translation="MKMAFLTYMFCFNSKENSSAKTRGSSISMPKPGQHISIRTFRELK FT VAQMLKNTWKKTETSLIMENSKLMVDQVEEVSNLQTTLMPKQSMQEIPLRRSLY" XX SQ Sequence 2727 BP; 737 A; 545 C; 581 G; 864 T; 0 other; acctgaggac ccgcgccggt gtacgaggcg tcttttgctt tatttacctt tatgtcattc 60 aaccaaatgc gctcctcagc gcttagatat tttaaatttg aattataaac gtggggacta 120 cgtaccccaa tgataaagat gtgggatcca ttgttgaatg actttcccaa atcacggcat 180 ggttttcggt gcatgattgc cattaagttc ttgcaagcct gtcaagaaca atatcctaat 240 aattcattgg gatttgaatt tttgcgcaaa ctcatttcaa atttgcgctc caaggaccat 300 gccaaagcgg aattacgata ccgccttctc atcaccgcta tcagtagttc gtcgaagatt 360 gaacttcgac agcccaatgg cactacctgc acctgcatcc agtgcccaag gcacaacaag 420 gagaaggcgt tggacgaatc gtccgatgtg gaggaaacca cgtttttatc gattgtatcg 480 gacacctgat gttccacgtg gttgtgaagg tccatgtaag gttcaatcct ttgaacaacg 540 gcatgatatt gcccatactg gcaaagtaat ttgcatttca gatgttactc gaggtaatgg 600 aattactcat cgtgttggga aacgtttctg tgtcaagtcc gtatatatta ctggtaaggt 660 ttggatggac gagaatatta agtccaaaaa ccatactaat acggtcatgt ttaagttatg 720 tcgtgacaga cgaccctttg ggactcctat ggatttcggt caggtgttta atatgtatga 780 taatgaacca agtactgcga cagtgaagaa cgatcttcgt gatcgttttc aagttctgcg 840 aagatttaat gccacggtta caggtggcca atatgcatgc aaggagcaag ccatggttaa 900 ccgtttttat cgtgttaaca atcatgtggt ttataatcat caggaagctg ccaaatatga 960 aaatcatact gagaatgcgt tgttattgta tatggcatgt actcatgctt caaaccctgt 1020 gtatgcgaca ttaaagatca ggatctattt ctatgattct gttggaaatt aataaagatt 1080 gaattttatt tcattgtttt gttgcacctc aattgtgcct tcaaatacat tgtacattac 1140 atgatcgaca gatcgaataa cattattaat acaaagtacg cctaaactat tcagaaattg 1200 aaaactgaag cttaaatgtc tttaagaaaa gaccagtcgg aggccgtaag gtcgtccaaa 1260 ttttgaaggt caaaaaacat ttgtgaatcc ccagtgcctt ccttaagttg tggttgaatc 1320 tgatctggac agtcaaaatg tcgttgttgc tgttgaacgg tctcttgtga tgctcgagga 1380 tcttgaaata taggggattt tttatctccc agatatatac gccattctgt gcttgaattg 1440 cagtgatgtt ctcccctgtg cgtaaatcca tggttagcac agttaatgtg catataatat 1500 gagcagccgc acttgaggtc aattcgtttg cgtcgaattg ctttcttctt ggcgcacctg 1560 tgttgcgctt tgattgacgg tggtgaaaaa tggttctttg atggtgtaga attccgcatt 1620 cttggaagcc cacaatttta gtgatgcatt tgcttcctcg tcgaggaact ctttataaga 1680 agatttgttg cctgggttgc agagaaagat tgtggggata ccacctttaa tcattgtggg 1740 ctttccgtat ttgacgttac tttgccagtc acgttgtgcg cccatgaatt ctttgaaatg 1800 tttcaaataa tgcggatcga cgtcatcaat gacgttatac catgcatcgt tggaatacac 1860 tttcggacta aggtccaaat ggccgcagag ataattgtgc ggccccaatg cacgagccca 1920 tgtcgtcttc ccagtacgac tatcaccttc aatgacaatg ctaatcggtc tttctggccg 1980 cgcagcggaa tccttcacat ttctttccgc ccaagaagaa atgtacggtg gaacattatc 2040 gaatgattca attgaataac gaggttcata aactggaaca cttttttcaa aaattttatc 2100 aaaattctta gctaaattat gaaaatataa aacgaaatcc ttcggagcct tttcctttag 2160 tataacgagc gcctcagagg tatttcctgc attgattgct tcggcataag cgtcgtttgc 2220 agattgctta cctcctcgac ttgatcgacc atcaatttgg aattctccat gatcaacgac 2280 gtctccgtct ttttccatgt attttttaac atctgagcta cttttagctc cctgaatgtt 2340 cggatggaaa tatgttgacc tggtttcggc atggagatcg aagaacctct ggtttttgca 2400 ctggaatttt ccttcgaatt gaagcagaac atgtaagtga ggaatgccat cttcatgaag 2460 ttctctgcaa attcggatga atttcttgtt tacaggagtt gatatagcga gtaattgctc 2520 caaagcagct tcctttgaca gagtgcatct gggatatgta aggaaatagt tctttgcgtt 2580 tatcttgaaa cgactcgaat ttgccatatt gcaagtcgtt tttgtatcgg tgtacaccga 2640 ttgccttata gcgcctgtta ttggtgtatt ggagtcccat atataggagt ctcctaaaac 2700 cctctaacgg gtcctcagaa taatatt 2727 //