ID HE806431; SV 1; circular; genomic DNA; STD; VRL; 2748 BP. XX AC HE806431; XX DT 07-JAN-2013 (Rel. 115, Created) DT 07-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Chilli leaf curl virus complete genome, isolate P-15 XX KW complete genome. XX OS Chilli leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2748 RA Akhtar S.; RT ; RL Submitted (08-MAY-2012) to the INSDC. RL Akhtar S., College of Agricultural and Marine, Sciences, Sultan Qaboos RL University, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, RL OMAN. XX RN [2] RA Khan A.J., Al-Zaidi A.M., Akhtar S.; RT "Molecular characterization and infectivity analysis of Chilli leaf curl RT virus from Oman"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..2748 FT /organism="Chilli leaf curl virus" FT /host="Capsicum annuum" FT /isolate="P-15" FT /mol_type="genomic DNA" FT /country="Oman:Suaiq" FT /isolation_source="host leaf" FT /collected_by="Abdul Rehman Mohammed Obeid Al-Matroushi" FT /collection_date="2011" FT /db_xref="taxon:172278" FT CDS 151..516 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="UniProtKB/TrEMBL:L0P1I6" FT /protein_id="CCH63265.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL FT ISVIRARNYVETTSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES FT EAQDVQDVQKPRCSEGM" FT CDS 311..1069 FT /gene="V1" FT /product="coat protein" FT /db_xref="UniProtKB/TrEMBL:L0P2S4" FT /protein_id="CCH63266.1" FT /translation="MSKRPADIIISTPVSKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCIKGTGLTHRVGKR FT FCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEPSTAT FT VKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENA FT LMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1066..1470) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="UniProtKB/TrEMBL:L0P0Y7" FT /protein_id="CCH63267.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDI FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLNVLNNFAVISINN FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY" FT CDS complement(1211..1615) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="UniProtKB/TrEMBL:L0P169" FT /protein_id="CCH63268.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHSSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT CDS complement(1518..2603) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="GOA:H2DGX5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DGX5" FT /protein_id="CCH63269.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDQASSR" FT CDS complement(2153..2446) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGV3" FT /protein_id="CCH63270.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2748 BP; 759 A; 552 C; 633 G; 804 T; 0 other; accggatggc cgcgattttt tgtttaccgt ggaccccgcg atgcacgtgc tgacaaatac 60 atgtggacca attaaaaacg tccctcaaag cttaattgtt tcgtggtccc ctctataaac 120 ttgggctcca agtagtgggt ttgtatcaca atgtgggatc ctttactaaa tgagtttccc 180 gaaagtgttc atgggtttag gtgtatgtta gcagtgaaat atctgcaatt agtagaaaat 240 tcatattcgc cagacacatt agggtacgat ttaatcaggg atttaatttc agttattagg 300 gctagaaatt atgtcgaaac gaccagcaga tataatcatt tccacgcccg tctcgaaggt 360 acgccgtcgt ctcaacttcg acagcccata tgccagccgt gctgctgccc ccattgtccg 420 cgtcacaaag gcaaaggcat gggccaacag gcccatgaat cggaagccca ggatgtacag 480 gatgtacaga agcccagatg ttccgagggg atgtgaaggc ccatgtaagg tccagtcctt 540 tgagtctaga cacgatgtag ttcatatagg gaaggttatg tgtattaagg gtaccgggtt 600 aacccataga gtaggtaagc gtttctgtgt taagtctgtt tatgtcttag ggaagatatg 660 gatggatgag aatatcaaga ctaagaatca cacgaatagt gtgatgttct tccttgtccg 720 tgatcgtcga cctacaggtg caccacaaga ttttggagat gtgtttaata tgttcgacaa 780 cgaacctagc actgccactg tgaagaatat gcatagagat cgttatcagg tcttgaggaa 840 atggcacgca acggttactg gtggacagta cgcgtcgaag gaacaggcat tagttaagaa 900 gttcgttagg gttaacaatt atgttgtgta taaccagcag gaagctggaa aatatgagaa 960 tcatagtgag aatgctctga tgttgtatat ggcgtgtact cacgcctcta accctgtgta 1020 tgctacattg aagatacgta tctatttcta tgattcagta tcgaattaat aaagattata 1080 ttttattgaa tatgattggt ttacatatac aacgtgatct aatacattcc ataatacatg 1140 atcaactgct ctatttacat tgttaatact aattacagca aaattattaa gcacattcaa 1200 tacttgggtt ttaaataccc ttaagaaatg accagtctga ggctgtaagg tcgtccagat 1260 tcggtaggtt agaaaacatt tgtgcatccc caacgctttc ctcaggttgt gattgaaccg 1320 tatctgcact gtgatgatgt cttggcttct caggaatggc ctgttgtggt gctctgttat 1380 cttgaaatac aggggatttg ttatctccca gataaacacg ccattctctg cttgagctgc 1440 tgtgatgggt tcccctgtgc gtgaatccat agccgtggca acgtaatgcg atgaaatatg 1500 aacagccgca atcgaggtca acgcgacgac gcctggtccc cttcttggcc agcctgtgct 1560 gcactttgat tggaacctga gtagagtggg cctgtgaggg tgatgaaggt cgcattcttt 1620 aaagcccaat gtttgagtgc ggaattcttt tcttcatcca agaactcttt atagctggaa 1680 ttgggtcctg gattgcagag gaagatagcg ggaattccac ctttaatttg aactggcttt 1740 ccgtattttg tatttgattg ccagtccctt tgggccccca tgaattcttt aaagtgtttt 1800 agataatgcg ggtcgacgtc atcaatgacg ttatacgagg catcattgct gtacacttta 1860 gggctaaggt ctaagtgacc acataggtag ttatgtggac ccaacgacct agcccacatg 1920 gtcttcccgg ttcgactatc accctcaatt acaatactca tgggtctcaa aggccgcgca 1980 gcggcaccca ccacgttcac agaagcccat tcctcaagtt catcaggaac ttgatcaaaa 2040 gaagaagaaa gaaaaggaga aacataaaca tccggtggag gcgtaaaaat cctatctaaa 2100 ttagcattta aattatgaaa ttgtaaaaca taatctttgg gagctttctc ccttaaaata 2160 ttgagggccg cagccttgga ccctgaattg attgcctcgg catatgcgtc gttggcagat 2220 tggcaacctc ctctagctga tctgccatcg atctggaaaa ctccagagtc aatgaagtct 2280 ccgtctttct ccacataggc tttgacatct gaagagctct tagctctctg aatgttcgga 2340 tggaaatgtg ctgaccgggt tggggaaatg aggtcgaaga atctgttgtt tgtgcattga 2400 tatttgcctt cgaattggac gagcacgtgt agatgaggtt ccccattctc gtgcaattct 2460 ctgcaaaccc taataaataa tttatttact ggggtttcta agttttgtaa ttgggaaagg 2520 gcctcttctt tagtaagaga gcagttagga tatgttagga aataattttt agcatttata 2580 ttgaatctcc ccgctctagg catattggtg gacactcaaa cttactatgc aatcggtgga 2640 atgggggaca atttatatgt gtccaccaat ggcaaattgg taattgttgt tacattaaaa 2700 aaatttaaaa ttcaaattcc gacaaaagcg gccatccgca ttaatatt 2748 //