ID GQ996953; SV 1; linear; genomic RNA; STD; VRL; 6006 BP. XX AC GQ996953; XX DT 01-APR-2010 (Rel. 104, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Bean pod mottle virus isolate Iowa-Desmodium illinoense 1 segment RNA1, DE complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6006 RX DOI; 10.1007/s00705-011-1005-0. RX PUBMED; 21562882. RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT "Landscape epidemiology of bean pod mottle comovirus: molecular evidence of RT heterogeneous sources"; RL Arch. Virol. 156(9):1615-1619(2011). XX RN [2] RP 1-6006 RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT ; RL Submitted (21-SEP-2009) to the INSDC. RL Department of Plant Pathology, Iowa State University, 351 Bessey Hall, RL Ames, IA 50010, USA XX DR MD5; 6046fd13c56c6f14b84dd4766b8c14dc. XX FH Key Location/Qualifiers FH FT source 1..6006 FT /organism="Bean pod mottle virus" FT /segment="RNA1" FT /host="Desmodium illinoense" FT /isolate="Iowa-Desmodium illinoense 1" FT /mol_type="genomic RNA" FT /country="USA" FT /note="subgroup: I and II; recombinant" FT /db_xref="taxon:12260" FT CDS 368..5923 FT /codon_start=1 FT /product="polyprotein 1" FT /db_xref="GOA:D5IC38" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:D5IC38" FT /protein_id="ADD92355.1" FT /translation="MKFYPGQNISEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLSYAAFCLEMGSHSIEEMEYDDGELIFSYFQNFLLSIVSNSSKTTKLRAYIR FT SAFAYHFQHFVEFDQYTNDSLNTVDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLLMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELLAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFITNSELVTC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALSVLEGLATQLTSFCDTSLVAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLEVVSNFVRKLLGLDSAFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEANKLMRESAL FT HCSKTIRKIPFVIFAHGESRVGKSLLVDKLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVVSEPSAEAQLIPLVSSAPYPLNMAGLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHDHYVVDQTFE FT SYADLLAHCFTKWERHVKEQESNLSQIKGKKSESGHFYNFQQLMDLAVSWNLNADIMKN FT RIKAERSDMVYVFSAGRKDKILHCFLNKEGECTVRPDSIDDPEAQALLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYSGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KSYWHVYDPDKFQMFDNSEIGLYSNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPEWAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEGYDPFLGGIQKYA FT TPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALNGVEGLDYMERIPLATSE FT GFPHVLSRKNGEKGKRRFVSGDGEEMTLIPGTSVEEAYNKLIVELEKSVPTLVGIECPK FT DEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSME FT WTGLANRLLSKGNDILCCDYASFDGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLA FT CCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSF FT KNFVSLCVYGDDNLISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLAD FT CDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSP FT EEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQRMMNAPDSNDNIDLLLSIDLLGLQ FT GAGKAFPNKIVFDNKLVLANTQEFFDGNFPVDSWLPIFVNCLYPVSQLPSEAVVVNVTC FT GSGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVK FT NEILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" XX SQ Sequence 6006 BP; 1741 A; 999 C; 1317 G; 1949 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcataggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gatttcaaag acttctcaat ttctttctac 120 atttcttgta tacggctttc aaagtgaaag aaaatcactc tctgtgctgg tcacagactt 180 cgtgaatcat tttctttctg ctctcagttc atttgctgaa cactctccta tttgatatag 240 gacttcgtgt cagatttgaa cttctcctat ctctttttct cggttcttca tttgatttca 300 aacttttctg aaatttaaat ctcttttgac attttgaact ttgtgttggc tccatttgaa 360 aaacaacatg aagttctatc ctggtcaaaa tatttccgaa attgtttacc actttcagag 420 taatgagaca gccaataggt tagatgcata ttttgcttgt ggctgtgagg aggatactga 480 agtcctcgct cgtttgaagc agtgtaatcc tcgtctgctt catctgtcat atgctgcctt 540 ttgtttggaa atgggcagtc attcaataga ggaaatggaa tatgatgatg gggaattaat 600 tttttcctat ttccaaaact ttttactttc catcgtttcc aattcttcta aaacaaccaa 660 attgagagca tacattcgtt cagcatttgc atatcatttt cagcattttg ttgaatttga 720 tcaatataca aatgattctc tcaatactgt ggatacaagt gtatcagccc aagggatagc 780 agacttggct ctctctatgg ttagatggat acccactcag attaaaaaag ttgttaattt 840 tggtgtggga tctgttatag agtctttttc agagcatttt aataagctct tgatgcaata 900 ttgtccaata gtttttcaag ctttcagctg ggtcaacaat atttggacaa tggtcaaaga 960 gtggatagaa gaagctgcga aagagatttc atggtttttg caaggatgca aagagttgct 1020 agcctgggga atgtgtattt tggctagctc ctgtgctcta ggattggttg aaaaatgcct 1080 tatctctttg ggcatgattt ccgaatcttt tgatttggtt ggtttgtttg ttcgatctgc 1140 cattgtggga gctttctgtg tttccataaa aactggcaag ttcatcacga atagtgaatt 1200 ggtcacttgt gctaccattg cagtttctac aatagcaact gtaatgtctc aggcttttaa 1260 gccttctgaa gagattaagg ggcagttcca agccctttca gttctagaag ggttggcaac 1320 acagctcact tcgttttgtg acacgtcttt agttgctatg ggaaaaacct gcacagcttt 1380 taatcaaatt tgcactgctg gcaaaaatgt taaggtgatt gcaggtaggt tgctggaagt 1440 tgtttctaat tttgtcagaa aattattagg attggatagt gcttttctca gagatgctgc 1500 actcattttt tcccaagatg tggatggatg gttgcgtaac atcagttggt gccaggaaca 1560 gtttttgttg aaagcttaca tgtcgcaaga tgatcttatt gtcctgcgct ctttagttgt 1620 taaaggtgaa agaatgaggg aacagatgct tgaaggagaa gttaaggtat ctccaagtgt 1680 ttgcaacctt attgtcaaag gctgtgaaga agcaaataaa ttgatgcgtg agagcgcact 1740 tcattgttca aaaacaatta ggaagattcc ttttgttatt tttgctcacg gtgaatcccg 1800 agttgggaaa tctctgttgg ttgataagct aatcacagat ttctgtgatc atttggaaat 1860 tggagaagat gctgtgtact caaggaatcc atcagatcct ttctggagtg gatatagaag 1920 gcagccaatt gttactattg atgattttgc tgctgttgtt tcggagccat ctgctgaagc 1980 tcaattaatt ccattagttt caagtgctcc ttatccatta aacatggctg gtttagagga 2040 gaagggaatg cactttgatt cccagatcat gatgtgttct tcaaatttct tagagccgtc 2100 tcctgaagct aaaattagag atgatatggc ttttagaaat cggagacatg tgctgatcac 2160 agttgaactc aaacctgggg ttgaatatga tgagagtgat tttactaaaa atcagcgata 2220 tttgctgaaa acttggtttc atgatcatta tgttgtagac caaacttttg agtcctatgc 2280 tgatctgctg gcacattgtt ttaccaagtg ggagagacat gttaaggagc aagagtcaaa 2340 tctgtctcaa attaagggca agaaaagtga aagtggtcat ttttataatt ttcaacaact 2400 tatggatttg gctgtttctt ggaatcttaa tgcagatatc atgaaaaaca ggatcaaggc 2460 tgagagaagt gacatggttt atgttttttc tgcagggagg aaggataaaa ttttgcattg 2520 ttttctgaac aaggaaggcg agtgcacggt tcgtcctgat tcaatagatg atcctgaagc 2580 gcaagctttg ctcaaagctt cagagacaat gctcatgaaa gcctatgcct tccttaaata 2640 caataatgca acaaatttga ttgtcagaac ccatttggca gaactagtga atgaagattt 2700 ttatgatgag aaattcaatt tcattggaac aattggaaca ccggcttttc atcgccaaat 2760 agctgcacat ttggaaaaga tgccattgtg gcaaaaagca attttgtgtg gaatgggaca 2820 ttgtttgtct cggaaaagca aagaaacatg gtattctggg atgaaggaaa aatttgtaca 2880 aatgatgaag agcatctatg aaacagaagt cacagattgg ccagtaccac tgaaaatcat 2940 ttctggaacc attcttgcaa caattttggg aacaaccttc tggaaactct tttcctttct 3000 tagagatgct ggtaatgggg gagtttttgt tggtaatgtt gcttcagcat tcacaacttc 3060 aagtgtgctt gaggcccaga gtagaaagcc caacagatat gaagtttccc aatacagata 3120 tcgcaatgtg ccaataaagc gcagagcatg ggttgaaggc cagatgtctt tcgatcagtc 3180 tgtagtagca attatgtcta aatgcaaagc cagcatgaga atgggaaaca ctgatgctca 3240 aattttgatg gttccagggc gcagattcat agctcatgga cattttttca aaaatctgac 3300 tcagaaagtg cgagtccaaa ttgttacatc tgaaaagagt tactggcatg tgtatgatcc 3360 tgacaagttt cagatgtttg acaacagtga aataggtctt tattctaatc ccactttgga 3420 agatatccca cattcagctt gggacctttt ttgctgggac agtgagaaaa ctttgccaaa 3480 taatttttct gcagaattgc tctcttgcaa actggatact gttactggcc aatattatcc 3540 tgagtgggct ccaattaatt gtcgagttca tcgacaacca attcacatca ctgaaggaaa 3600 ttatgtcaga aagcaagatg tcagcattga atatgatgca tgtacaattc caaatgattg 3660 tggttcattg gttgttgcca aggttggaaa tcacaaacaa attgttggtt tccatgttgc 3720 tggaagcaaa ggaagactgg gatatgcttc attgatacca tatgttgagc cagttgtgca 3780 agctcaaagt gctgaagttt actttgactt cttccctgtg gaggttgata gtcaagaggg 3840 agttgctcac attggtgaat tgaaatctgg tgtctatgtt ccactgccta caaaaactaa 3900 tttggtggaa actcccaagg aatggcaact ggatctacct tgtgacaaaa ttcctagtgt 3960 tttgactaca actgatgaga gattggtagg cacagaacat gagggatatg acccttttct 4020 tggtggaatt caaaaatatg ccactcccat gatgccccta gatgaagaaa ttctttctaa 4080 ggttgcacaa gatatggttg aggaatggtt tgactgtgtt gatgaggagg attccttcga 4140 ggaagtttct ttaagtgcag cactcaatgg tgttgagggt ttggactata tggaaagaat 4200 tcctcttgcc acatctgagg gttttcctca tgtgctttca cgcaaaaatg gcgaaaaagg 4260 caaaaggaga tttgtttctg gggatggtga agagatgaca ttgattccgg gaaccagtgt 4320 tgaagaggct tacaacaagc taatagttga acttgagaaa agtgttccta cattggttgg 4380 cattgaatgt cccaaggatg agaaactccc tcgtcgcaaa atttttgaca aacctaagac 4440 gcgctgcttc actattctcc ctatggagtt taatcttgtg gttcgtcaga agtttttaaa 4500 ttttgtgagg ttcattatga agaaaaggga caagcttagt tgtcaagttg gaatcaaccc 4560 atactccatg gaatggactg gtttggccaa tagattactg agcaagggca acgatattct 4620 gtgttgcgat tatgctagtt ttgatggttt gattaccaag caagttatga gcaagatggc 4680 agaaatgata aacagtcttt gtggtggtga tgaaaaattg atgcgtgaaa ggacacacct 4740 gctgttggct tgttgttcaa ggatggcaat ttgtaagaaa gatgtttgga gagttgaatg 4800 tggaatccct tctggatttc cgctcacagt tatttgcaat agcattttta atgagatgct 4860 cattagatat agctatgaaa aattactgcg ccaggctaaa gctccaagta tgtttttaca 4920 atccttcaaa aattttgttt ctttgtgtgt gtatggtgat gataacttaa ttagtgttca 4980 tgaatatgtc aagccttact ttagtggttc taaattgaaa agctttctag ctggtcataa 5040 tattaccatt actgatggta ttgacaaaac tagtgcaact ttgcaattta gaaagttagc 5100 agattgtgat tttctcaaga gaaactttaa gcagatgtct aatgttttgt gggtggctcc 5160 tgaagacaag gcgagtttat ggtcacagct tcattatgtt tcgtgtaata atctggaaat 5220 gcaagaagct tatcttgtca atctcgtaaa tgtgttacga gaattgtatt tgcacagtcc 5280 agaggaagct cgccaattga gaaggaaagc tctctctcgt attgaatggc tgcaaaaagc 5340 tgatgtgcct accatagcac agattgaaga gttccattca atgcagagga tgatgaatgc 5400 tcctgattca aatgataata ttgatctact gttgagcatt gatttgttgg gtttacaagg 5460 agcaggtaaa gcttttccaa acaagattgt ttttgataat aagcttgtgt tggctaacac 5520 acaagaattc tttgatggaa attttccagt ggattcttgg ttaccaattt ttgtgaattg 5580 cctttatcct gtaagtcaat taccttcaga agcagttgtt gtaaatgtta catgtggtag 5640 tggacgtggt ggtttaccca ccactgcttg gattagttct gcagttaaca atcgctcctc 5700 agatatcaac aaaaagattc gcacagcact tgggaaaggt aagaaaattg tttttcttac 5760 tagagttgat ccttttccag tagctctact ggctgttctt tttggcgtta agaatgaaat 5820 tctgagttct aacgccacta atcctatgct gacgcgactt cttgagaact gtaagagtct 5880 caaatatctg gttgatgagt gtccttttgc atttgtgaac tagtatgtaa tattttactc 5940 acttaaataa agcgcattac tatgtgcaat gagtgtgttt aaatataaaa aaaaaaaaaa 6000 aaaaaa 6006 //