ID GQ996947; SV 1; linear; genomic RNA; STD; VRL; 3694 BP. XX AC GQ996947; XX DT 01-APR-2010 (Rel. 104, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Bean pod mottle virus isolate Iowa-Prignitz 10 segment RNA2, complete DE sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; OC Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-3694 RX DOI; 10.1007/s00705-011-1005-0. RX PUBMED; 21562882. RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT "Landscape epidemiology of bean pod mottle comovirus: molecular evidence of RT heterogeneous sources"; RL Arch. Virol. 156(9):1615-1619(2011). XX RN [2] RP 1-3694 RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT ; RL Submitted (21-SEP-2009) to the INSDC. RL Department of Plant Pathology, Iowa State University, 351 Bessey Hall, RL Ames, IA 50010, USA XX DR MD5; ccd3d7539d5a8f162ca5f8e6df36790d. XX FH Key Location/Qualifiers FH FT source 1..3694 FT /organism="Bean pod mottle virus" FT /segment="RNA2" FT /host="Glycine max" FT /isolate="Iowa-Prignitz 10" FT /mol_type="genomic RNA" FT /country="USA" FT /note="subgroup: II" FT /db_xref="taxon:12260" FT CDS 468..3524 FT /codon_start=1 FT /product="large polyprotein 2" FT /db_xref="GOA:D5IC29" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="UniProtKB/TrEMBL:D5IC29" FT /protein_id="ADD92346.1" FT /translation="MFASLIFSGDNRLTEKTIFTCRDLDILVVYYTIATQFRKFLPHYI FT RWHLYTLLIYILPSFLTAEIKYKRNLSNIHISGLFYDGRYKFWTKHEKNLALTEEEKME FT VIRNKGIPADVLAKRAHEFEKHVAHESLKDQIPAVDKLYSTKVNKFAKIMNLRQSVVGD FT LKLLTDGKLYEGKHIPVSNISAGENHVVQIPLMAQEEILSSSASDFRTAMVSKNSKPQA FT TAMHVGAIEIIIDSFASPDCNIVGAMLLVDTYHTNPENAVRSIFVAPFRGGRPIRVVTF FT PNTIVQIEPDMNSRFQLLSTTTNGDFVQGKDLAMVKVNVACAAVGLTSSYTPTPLLESG FT LQKDRGLIVEYFGRMSYVAHNVNQPQEKDLLEGNFSFDIKSRSRLEKVSSTKAQFVSGK FT TFKYDIIGAGSHSSEDFPEKEDQEKPKKIDARLRQRIDPQYNEVQAQMETNLFKLSLDD FT VETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGNFRASVDLQRTHRIKGM FT IKMVATVGIPENTGISLACAMNSSFRGRASSDIYTICSQDCELWNPACTKAMTMSFNPN FT PCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFISSQECVPRTYCVLNPQN FT PFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKNAILMNMPNAVLSMWRYFVGDLVF FT EVPKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEIQEKVVLKFSQEEFLTA FT WSTQVRPATTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLATINNMCAYGLNPGISGS FT RLLGTIPQSISQQTVWNQMATVRTPLNFDPSKQSFCQFSIDLLGGGILVDKTGDWITLI FT QNSPISNLLRVAAWKKGCLMVKIVMSGNAAVKRSDWASLVQVFLTNSNSTEHFDACKWT FT KSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLIDNPKQSTVFDILLGISQD FT FEIAGNTLMPAFSVPQATARSSENAESSA" FT CDS 774..3524 FT /codon_start=1 FT /product="small polyprotein 2" FT /db_xref="GOA:D5IC30" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="UniProtKB/TrEMBL:D5IC30" FT /protein_id="ADD92347.1" FT /translation="MEVIRNKGIPADVLAKRAHEFEKHVAHESLKDQIPAVDKLYSTKV FT NKFAKIMNLRQSVVGDLKLLTDGKLYEGKHIPVSNISAGENHVVQIPLMAQEEILSSSA FT SDFRTAMVSKNSKPQATAMHVGAIEIIIDSFASPDCNIVGAMLLVDTYHTNPENAVRSI FT FVAPFRGGRPIRVVTFPNTIVQIEPDMNSRFQLLSTTTNGDFVQGKDLAMVKVNVACAA FT VGLTSSYTPTPLLESGLQKDRGLIVEYFGRMSYVAHNVNQPQEKDLLEGNFSFDIKSRS FT RLEKVSSTKAQFVSGKTFKYDIIGAGSHSSEDFPEKEDQEKPKKIDARLRQRIDPQYNE FT VQAQMETNLFKLSLDDVETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGN FT FRASVDLQRTHRIKGMIKMVATVGIPENTGISLACAMNSSFRGRASSDIYTICSQDCEL FT WNPACTKAMTMSFNPNPCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFIS FT SQECVPRTYCVLNPQNPFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKNAILMNMP FT NAVLSMWRYFVGDLVFEVPKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEI FT QEKVVLKFSQEEFLTAWSTQVRPATTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLAT FT INNMCAYGLNPGISGSRLLGTIPQSISQQTVWNQMATVRTPLNFDPSKQSFCQFSIDLL FT GGGILVDKTGDWITLIQNSPISNLLRVAAWKKGCLMVKIVMSGNAAVKRSDWASLVQVF FT LTNSNSTEHFDACKWTKSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLIDN FT PKQSTVFDILLGISQDFEIAGNTLMPAFSVPQATARSSENAESSA" XX SQ Sequence 3694 BP; 1049 A; 658 C; 762 G; 1225 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcacaggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gatttcaaga atcttccaat ttcttcctac 120 ttcttggtgt acgatttctt aagggaaaga aaatcactct ctgtgctggc cacagacttc 180 gtgaatcatt ttctttttcc actcttagtt tatttgctga acactctcct atttgatata 240 ggacttcgtg tcagatttaa actttttctg tttctttctc agttctctgc ttgatttcaa 300 gttcaagctg gtgaaatctt ggattagtgc tcccactctc ctatctggta taggacttcg 360 tgggtagact tttctatttc tgtcctttct ttcactctct tcttctcact gatccgcatt 420 gccgttcaaa gtggtcttat ttgaaaaaca cttgggcgtt ggtgcaaatg tttgcttcgt 480 taattttctc tggggacaac aggctcactg agaaaacaat ttttacttgc agagatctgg 540 acatcttggt tgtttattat acaatagcaa ctcaatttag aaaatttcta ccgcattaca 600 ttaggtggca tttgtatacc ttgttgatct acattctccc atcttttctc actgctgaaa 660 ttaaatataa gcggaatctg agtaatattc atatttccgg cttattttac gacggcagat 720 acaaattctg gactaaacac gagaaaaatc ttgctttgac agaagaggaa aagatggaag 780 tgattagaaa caaaggcatt cctgctgatg ttcttgcaaa gcgagctcat gaatttgaaa 840 aacatgttgc tcatgaaagc ctcaaggatc aaattcctgc tgttgacaag ttgtattcta 900 ctaaggttaa taagtttgca aaaattatga accttagaca aagtgttgtt ggtgatctta 960 aacttcttac tgatgggaag ttgtatgagg gtaagcatat tcctgtatct aatattagtg 1020 caggggagaa tcatgtagtt caaatacccc taatggcaca ggaggaaatt ctgtcttcta 1080 gtgcaagtga tttcagaact gcaatggtga gtaaaaatag caagcctcaa gctactgcaa 1140 tgcatgtggg agctatagaa attatcattg atagtttcgc aagtcctgac tgcaacatag 1200 ttggtgcaat gcttttggtt gatacttatc ataccaatcc tgaaaatgca gttcgtagta 1260 tttttgttgc gcctttcaga ggcggaaggc ccattcgggt ggttacattt ccgaatacca 1320 ttgtgcagat tgaaccagac atgaattcaa ggtttcagct tttgagtacc actaccaatg 1380 gtgattttgt tcaaggaaaa gatctcgcaa tggttaaagt taatgtagca tgtgctgctg 1440 ttggcttgac atcaagttac actccaactc cactgttgga atctggtttg caaaaagaca 1500 gagggttaat tgtggaatat tttggaagga tgtcttacgt tgctcacaac gttaatcagc 1560 cccaagagaa agatttgttg gagggaaatt tttcctttga tattaaatct cgctctagat 1620 tggaaaaagt ttcctctact aaagcacaat ttgttagtgg aaaaaccttc aaatatgata 1680 taattggtgc tggttcacat tcttcagaag attttcctga aaaagaagat caagaaaaac 1740 ccaaaaagat tgatgctaga ttgagacaaa gaatagatcc tcaatacaat gaggttcagg 1800 ctcagatgga aacaaatttg tttaaattgt ctcttgatga tgttgaaact cctaaaggtt 1860 ccatgttgga tcttaaaatt tctcaatcta aaattgcact tcccaaaaac acagttggag 1920 gaaccattct gcgtagtgat ctattggcaa attttttgac agagggcaat tttagagcaa 1980 gtgttgattt gcagcgcact catcgtatta aaggaatgat taaaatggtg gccacagttg 2040 gtattcctga gaatacaggt atatcattgg cctgtgctat gaacagttct tttagggggc 2100 gtgccagttc tgatatttac actatttgct ctcaagattg tgaattgtgg aatcctgctt 2160 gcacaaaagc aatgactatg tcatttaatc caaacccgtg ttctgatgca tggagtttgg 2220 aatttttgaa gcgcaccgga tttcattgtg atatcatttg tgtcactgga tggactgcca 2280 ccccaatgca ggatgttcag gttacaattg attggtttat ttcctctcag gaatgtgttc 2340 ccaggaccta ttgtgtttta aatccacaaa atccttttgt gttaaatagg tggatgggga 2400 aactgacttt cccccagggc acttcccgaa gtgttaaaag aatgcctctt tctatagggg 2460 gaggagctgg tgcaaagaat gctattctca tgaatatgcc aaatgctgtt ctttcaatgt 2520 ggagatattt tgttggagat ctcgtctttg aagttcctaa gatgacttct ccctacatca 2580 aatgtacagt ctctttcttt atagcatttg gaaatttggc tgatgacacc attaattttg 2640 aggcttttcc ccacaagctg gtgcagtttg gagagattca ggaaaaagtt gtattgaaat 2700 tttcacaaga ggaatttctt acagcttggt caactcaggt gcgtcctgca acaactctgt 2760 tggctgatgg gtgtccatat ttgtatgcta tggtgcatga tagttcagtg tctacaatac 2820 caggtgattt tgtcattggt gttaagttgg caaccataaa caatatgtgt gcatatgggc 2880 tcaatcctgg tatttcaggt tctcgtcttt tgggcaccat tcctcagtcc atttcacagc 2940 aaactgtttg gaatcaaatg gcaacagtga gaacaccatt gaattttgat cctagcaagc 3000 agagcttttg tcaattttct attgaccttc tcggtggagg aattttagtg gacaaaactg 3060 gagattggat cacacttata caaaattctc caattagtaa cttgttgaga gttgctgctt 3120 ggaagaaagg ctgtttaatg gttaagattg tgatgtctgg gaatgcagca gtcaaaagga 3180 gtgattgggc ctcattggta caagtgtttt taacaaacag caacagtaca gagcattttg 3240 atgcatgtaa gtggacaaaa tcggaaccac attcctggga attgatcttc ccaatagagg 3300 tgtgtggtcc taacaatggt tttgaaatgt ggagttctga gtgggcaaat caaacttcat 3360 ggcatttgag tttccttatt gacaatccca aacagtctac agtttttgac attctcctgg 3420 gaatttccca agattttgaa attgctggta atactcttat gccagctttt tctgttccac 3480 aggctactgc cagatcttct gaaaatgcgg aatcctctgc atgatctgga atttgtgttt 3540 tctttcgttt gtttgtttgt ttaattcaat aaaggaaatt aggcatgacc ctcttgttga 3600 gtatgctctg cctatttgaa aatttccaca cctcttttaa ttgtcgtaat gatgtgtgaa 3660 gtgtgtgtta ttttaaaaaa aaaaaaaaaa aaaa 3694 //