ID GQ994095; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC GQ994095; XX DT 24-JAN-2011 (Rel. 107, Created) DT 24-JAN-2011 (Rel. 107, Last updated, Version 1) XX DE Tomato leaf curl Ranchi virus, complete genome. XX KW . XX OS Tomato leaf curl Ranchi virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2762 RA Kumari P., Chattopadhyay B., Chakraborty S.; RT "Occurrence of tomato leaf curl Bangladesh virus in Ranchi, India"; RL Unpublished. XX RN [2] RP 1-2762 RA Kumari P., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (22-SEP-2009) to the INSDC. RL School of Life Sciences, Jawaharlal Nehru University, New Delhi, Delhi RL 110067, India XX DR MD5; 9aebfb95859b7e1831015d1a69241801. DR EuropePMC; PMC6344024; 30673741. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Tomato leaf curl Ranchi virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="Ranchi" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Punam Kumari" FT /collection_date="Dec-2007" FT /db_xref="taxon:938276" FT gene 145..492 FT /gene="AV2" FT CDS 145..492 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="required for viral movement and suppresion of host FT defense" FT /db_xref="GOA:E9JFY6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E9JFY6" FT /protein_id="ADN85597.1" FT /translation="MWDPLVNEFPESVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDIQKS" FT gene complement(296..970) FT /gene="AC5" FT CDS complement(296..970) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:E9JFY7" FT /protein_id="ADN85602.1" FT /translation="MILILASFLLVIHNIIINPNKLLHESLFFRRILSTSNGCMPFPKH FT LIPVTMNILHSGRTGLIIKHVKHFSKILGFIDRPTIPNKKKHHTISVILGLNIFVHPYL FT TQNIHRLNTKPFTHSMGHPSSTSNITDTHDFTYMLNVMSRLKGLHLTWAFTASRHIRTS FT VYPVHPGLSVHGPVRPCSCFGDADNGGSSTARIWAVEVETAAYLRSGRGNDYICWSLRH FT NF" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="required for encapsidation of viral DNA and insect FT transmission" FT /db_xref="GOA:E9JFY8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E9JFY8" FT /protein_id="ADN85596.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRIYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGMTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="enhances viral replication" FT /db_xref="GOA:E9JFY9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E9JFY9" FT /protein_id="ADN85600.1" FT /translation="MDSRTGELITAAQAENGVYIWEIQNPLYFKIIDHQNRPFLMREDI FT ITIQIQFNYNLRKALGVHKCFLVYRIWMTSQPPTGQFLRVFKTQVVKYLNNLGIISINN FT VIRAVDHVLWDVLEHIVYVDQSYSIKFNIY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TrAP; suppressor of RNAi; enhances transcription of FT virion sense ORFs" FT /db_xref="GOA:E9JFZ0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E9JFZ0" FT /protein_id="ADN85599.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSGREWRVYLGDSKSPLFQDNRPPEPSISHERRHNHNPNSVQLQP FT TESSGSAQVFSSLPNLDDFTASDWSILKGL" FT gene complement(1524..2609) FT /gene="AC1" FT CDS complement(1524..2609) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="Rep" FT /db_xref="GOA:E9JFZ1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E9JFZ1" FT /protein_id="ADN85598.1" FT /translation="MTAPNRFKINAKNYFLTYPKCSLAKEEALSQLLNIQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDVLDHGVFQVDGRSARESCQSANDAYAEAINSGSKAEALNILKEKAPKDYVLQYH FT NLNSNLDRIFTPPMEVYVSPFLSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEQKNTALKNWSLKNAFFVTLEGPL FT YSGSNQSAAQVSQEGEQTSSC" FT gene complement(2159..2452) FT /gene="AC4" FT CDS complement(2159..2452) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="suppressor of RNAi and pathogenicity determinant" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E9JFZ2" FT /protein_id="ADN85601.1" FT /translation="MGLLTCMCSSNSKVNSSAETIDSSTSHPQPGQHISIRTFRELRAL FT QMSKPTWRKTETCLIMEFSKSMEDQLERVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2762 BP; 768 A; 541 C; 606 G; 847 T; 0 other; accggatggc cgcgattttt ttaaagtggt ccccgcagcg tactaactga caaagacctg 60 tgaaccaatg aaaatcgacc ctcaaagctt aattgtttcc tggtcccctc tataaacttg 120 gtccccaagt tcccacatta caaaatgtgg gatcctttag tgaatgagtt tcccgaatcc 180 gttcacggtt ttagatgtat gttagcagtt aaatatttgc agttagtaga gaagacttat 240 tctcccgaca ccttagggta cgatttaatt agggatttaa tttcagttat tagggctaga 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcttcga aggtacgccg 360 ccgtctcaac ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaga gcatgggcga acaggcccat gaacagaaag cccaggatgt acaggatata 480 cagaagtcct gatgtgccta gaggctgtga aggcccatgt aaggtgcagt cctttgagtc 540 tagacatgac attcagcata taggtaaagt catgtgtgtc agtgatgtta ctcgtggaac 600 tgggatgacc catcgagtgg gtaaaaggtt ttgtgttaag tctgtgtatg ttctgggtaa 660 gatatggatg gacgaaaata ttaagaccaa gaatcacact aatagtgtga tgttttttct 720 tgttagggat cgtaggcctg tcgataaacc ccaagatttt ggagaagtgt ttaacatgtt 780 tgataatgag cccagtacgg ccactgtgaa gaatgttcat cgtgacaggt atcaagtgct 840 tcggaaatgg catgcaaccg ttactggtgg acagtatgcg tctaaagaac aagctctcgt 900 gaagaagttt gttagggtta ataattatgt tgtgtataac cagcaagaag ctggcaagta 960 tgagaatcat tctgagaatg cgttaatgtt gtatatggca tgtactcatg cctctaaccc 1020 agtgtatgct actttgaaga tacggatcta tttctatgat tctgtaacaa attaataaat 1080 attgaatttt attgaataag attggtctac atatacaata tgttctaata catcccataa 1140 tacatgatca actgcacgaa ttacattatt aatactgata attcctaaat tatttaaata 1200 tttaacaacc tgagtcttaa agacccttaa gaattgacca gtcggaggct gtgaagtcat 1260 ccagattcgg tagactagaa aacacttgtg cactcccaga gctttccgta ggttgtagtt 1320 gaactgaatt tggattgtga ttatgtcttc tctcatgaga aatggacggt tctggtggtc 1380 tattatcttg aaataaaggg gattttgaat ctcccagata tacacgccat tctctgcctg 1440 agctgcagtg atgagttccc ctgtgcgtga atccatgatc gtgacaggct agtgctatga 1500 aatatgaaca accacaaggg agatcaacac gacgacgtct gttccccttc ttggctaacc 1560 tgtgctgcac tttgattgga acctgagtag agtgggcctt cgagggtgac gaagaacgca 1620 ttctttaaag accaattttt tagtgctgta tttttctgtt catccaagaa ttctttatag 1680 ctagagttgg gtcctggatt gcagagaaag atagtgggaa ttccgccttt aatttgaact 1740 ggctttccgt attttgtatt tgattgccag tctctttggg cccccatgaa ttctttaaag 1800 tgctttagat agtgcggatc tacgtcatca atgacgttgt accaagcatc attattgtag 1860 accttagggc taaggtctag gtgaccacac agataattat gtggtcccaa cgatctagcc 1920 cacatggtct tacccgttct actatcacct tctatcacta tacttatggg tcttaacggc 1980 cgcgcagcgg cactgacgac attctcggca gcccactcct caagttcttc tggaacttga 2040 tcaaaagaag aagaaagaaa aggagaaaca taaacctcca taggaggtgt aaaaatccta 2100 tctaaatttg aatttaaatt atgatactgt aatacataat cctttggagc tttctccttt 2160 aatatattga gggcctcagc tttggaccct gaattgattg cctcggcata tgcgtcgttg 2220 gcagattggc aactctctct agctgatctt ccatcgactt ggaaaactcc atgatcaagc 2280 acgtctccgt ctttctccat gtaggttttg acatctgaag agctcttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gatgtgaggt cgaagaatct attgtttctg 2400 cactggaatt taccttcgaa ttggatgagc acatgcaagt gaggagtccc atcttcgtga 2460 agctctctgc aaattctaat aaattttttg gatgtgggtg tttggatatt taacaattgg 2520 gaaagtgcct cttctttagc tagagagcac ttgggataag tgagaaaata attttttgca 2580 tttattttaa accgattggg ggctgtcata ttgacttggt caatcggtgt ctctaaactc 2640 tctctatgta tcggtgtatt ggagtcctat atatatggag actccaaatg gcatatttgt 2700 aattttgaaa agttctttaa ttcaaaattc aaaattccca aagcggccat ccgtataata 2760 tt 2762 //