ID GQ369527; SV 1; linear; genomic RNA; STD; VRL; 7385 BP. XX AC GQ369527; XX DT 01-AUG-2012 (Rel. 113, Created) DT 01-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Arabis mosaic virus isolate ba segment RNA1-II, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7385 RA Marmonier A., Vigne E., Komar V., Demangeat G., Besse S., Gugerli P., RA Lemaire O.; RT "Comparisons of genomic and pathological features among barley and RT grapevine infecting-isolates of Arabis mosaic virus"; RL Unpublished. XX RN [2] RP 1-7385 RA Marmonier A., Vigne E., Lemaire O.; RT ; RL Submitted (09-JUL-2009) to the INSDC. RL UMR 1131, INRA, 28 rue de Herrlisheim, Colmar, 68 68000, France XX DR MD5; 658703603625bc322372b18819a27f87. XX CC GenBank Accession Numbers GQ369526-GQ369530 represent sequences CC from the 5 segments of Arabis mosaic virus isolate ba. XX FH Key Location/Qualifiers FH FT source 1..7385 FT /organism="Arabis mosaic virus" FT /segment="RNA1-II" FT /host="winter barley cultivar Express" FT /isolate="ba" FT /mol_type="genomic RNA" FT /country="Switzerland" FT /collection_date="1991" FT /note="identical sequence found in winter barley cultivar FT Mannitou" FT /db_xref="taxon:12271" FT CDS 230..7087 FT /codon_start=1 FT /product="polyprotein P1-II" FT /db_xref="GOA:I6LL56" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:I6LL56" FT /protein_id="ADJ39330.1" FT /translation="MWQISEGSQCCCTGKSWSNAEAKEARYVCDCLYNCRLVKVEVAPQ FT PPKSRIAPAQQKKERIAPLQNSNGRMAPTTPKSKRASVPDAPLVKQRCDVVVRVGPPAN FT LELVYPALVQEEVATPPTEKVLQPTTKADVRVPVCCAPKWMVAIPKPPVKTAPRVEQTQ FT FPKGAVCYNGTNFLDAAGKVVLSEGAKRILKGIRVAKQQRQRAARRSAACKKVRKARAL FT ALYKRLSEERTFQELPGGFAGEIPAGFFSYGKTVASPIATPKKVVSKRKRVSKPSTIAV FT PVQDFSCIDAFDWGEKSFPNEEAIEDDWVLVEKPVLKRQAAHSVQGRATEALTRFAASS FT GFTTKAHQKVEELAASGAAGHLIAGEFAELCLRSLVYNDAPTLSASIEELACEQDFKDA FT IELFNIELAELPTDSTTCGRFNDWASAAKTMAKGTGSLVGDLARLAGAGLVITFDKAIE FT YLQEKALTLCQKVFNATMAPYVSHLSEASDIIKKIWKKLSEWMESLKGKAGLALEVLAH FT HAIFALGAIVVGGVVVLVEKVLVATKVIPTCGIVLGAFLTLFFASLGLTALECTADEIF FT KMHQCCKGAIYSMYSVKEPVCEGEGDSTTKGVLQGLDNAISALTRVGQSMISFKLGSFS FT YYAKIAQGFDQLARGKRAIGELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSW FT LLKSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVS FT KLEEVHQRTACAGINEGMRQFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVY FT SRPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSM FT DSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLH FT NKCAYVNSEGVPQGPAVNTPMEEGWVSPSEAVATLKNLLGEHVLAEEEKLLDYRERIGN FT DHPIYNAAQEFIGNMHYPGHWITTEDKNTYGIKDEGFSFLAVDGKMYKYNVLGKLNPCE FT VVPPHPNVIPWLEEKTLTMVHWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGK FT DSSPEQQAFFKRLSLSERIYLRLCQIRIDAVKKEQLSGPSRGTLDILKDCMAKSKAKLV FT ENYSLLLTLVAVLVLIATAYSLISTLVGLAGCTSFAGGLVSMKQVSNASMPCSEPRLED FT RYAARNRFVSRISRARGDGPAKGQGEHEELVTELYYYFDGVKRLVSCCWFKGRSLLMTR FT HQALAIPVGNEVQVIYADGTDRKLVWPGKQEDGTCKGYIEFPENELVVFEHARLLTMPI FT KYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKYATARSDVHTVVDEGGSAVY FT QNKIRRHIIYAHEAKRNDCGAIAVAEIQRTPKVIAMLVSGSGNITYSSVIPNYSSSFVR FT GDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMRVPDEICFPYPNPKQPAILSDE FT DERLKGTIHEGYTPIRDGMRKFAEPMRLLDEKLLDEVAGDMVHTWFEVGEFLEDVPLNV FT AINGDVDEEYFDPMAMDTSEGYPEVLQRKAGEKGKARFFIGEPGSREFVPGCGPEKAYL FT SLEEECKMRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLL FT MKKRSYLPCQVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILATVATMIN FT AGYRNPVSNQQRSNLLLAISGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYC FT FKKIVPPIYRECFDRCVVLITYGDDNVFTVAQSIMESFTGDALKAEMATLGVTITDGKD FT KSLATIPARPLLELEFLKRGFKKGDGGMIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDN FT VNSALVELFLHQDREYLESVRNFYLEKLPPGSYKELTTWYQAQSFHESQLCGESNWKPQ FT GLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKSEEILLSLSSLLPGDVNV FT HKLDLKCGDGIGRLPSKASVLAQRKPGIVMRLCKQALNEKKTLVIRDERPYIGGWAMAC FT ICGESFGFSIRDTLALYANLLGPNRKNGLAGYFSNFESPVHVKKVHAITNGEEGAAELK FT EVFTFCEPRIVAASFGETRKEMLAHPPESFPNVVLVGGISFPKEGGEPGALYSHTDIVM FT SKKTKGVYVSEAILKCCLRCPGVTTKTVLQTSTIGSSLSKAHLKSLRQLQTHQCVRR" XX SQ Sequence 7385 BP; 1978 A; 1458 C; 1844 G; 2105 T; 0 other; atgaaaaaat ttctgtgagt tctatattaa aggcgatccc ctttaatctc ataatcaaga 60 gtttaagaaa ctcaaatttt catagtcaat ccgttaagag cggaaacaaa gccaaaccgt 120 taagagcggt actaaaagaa gagtttaaga aactcattgc tttatttttc atttcattta 180 cgctgtattt gtttagtttt tgttttgttt aattaaagct ttcgccacga tgtggcaaat 240 ttctgaaggc tcccagtgct gttgcactgg gaagtcctgg tctaatgccg aggccaaaga 300 ggctcggtat gtctgcgatt gtttatacaa ttgcaggctt gtcaaagttg aggtagcgcc 360 tcagcctccg aagagtagga tagcgcctgc tcaacaaaag aaggagagga tagcgcctct 420 tcaaaactcg aatggtagga tggcgcctac cacccccaaa tccaaaaggg cttccgtgcc 480 cgacgcacct ttggttaaac agaggtgtga tgttgttgtg agggttggcc cgccggctaa 540 cctagagttg gtataccctg ccttagtgca ggaagaggtg gcaaccccac ctactgaaaa 600 ggtcctgcag cctaccacaa aggctgatgt tagggtgcca gtttgctgtg cgcctaaatg 660 gatggtggct atccccaagc caccggttaa aactgctccc agagtggagc aaacacagtt 720 ccctaaggga gctgtgtgtt ataacggcac caactttttg gatgccgcgg ggaaagtcgt 780 cctatctgag ggcgcaaaga ggattctcaa gggaatccgc gttgctaagc agcaacgtca 840 aagggctgca cgtagatctg ctgcgtgcaa gaaagttcgc aaggccaggg ctctggcttt 900 gtataagcgc ttgtctgaag agcgcacctt tcaggagctg cctggaggat ttgcgggtga 960 aattcctgct ggtttcttta gctacggtaa aaccgtagct tctcccattg ccacccctaa 1020 aaaggtggtt tccaaaagaa agagggtgtc aaagccctct actattgctg ttccagtgca 1080 ggacttttcc tgcattgatg ccttcgattg gggggagaaa tccttcccaa atgaggaagc 1140 catcgaggac gattgggtcc ttgtggaaaa acctgttttg aaaaggcagg ctgcacactc 1200 tgtgcagggg agggcgactg aagcccttac aagatttgcc gcttcaagcg gctttacaac 1260 aaaagcccac caaaaggtgg aggagctagc tgcctctggc gcagctggcc acttgattgc 1320 aggagagttt gcagagctct gcctgagatc tttggtgtac aatgatgcac ctaccttatc 1380 tgcctctatt gaagagcttg cttgtgagca agattttaaa gatgctattg agctcttcaa 1440 tattgaactt gctgagttgc caactgattc caccacctgt ggacggttta atgactgggc 1500 ttctgctgcc aaaactatgg cgaaaggaac tggttcttta gttggcgatt tagctcgctt 1560 ggctggggct ggtcttgtca ttacatttga caaggccatt gaatatttac aggaaaaggc 1620 attgacactt tgccaaaaag tgttcaatgc caccatggcc ccctatgtta gccacttgag 1680 tgaagcttcc gacattatta agaaaatttg gaagaagctc agtgaatgga tggaaagctt 1740 aaagggtaaa gctggactgg ccttggaggt gcttgcacac catgccatct ttgctcttgg 1800 agctattgtt gtgggaggag ttgttgtcct tgttgagaaa gtgctagtag ctaccaaagt 1860 tatccccact tgtggaattg tgctaggtgc tttcttaact ctcttctttg ccagtcttgg 1920 attgacggct cttgagtgca ctgctgatga aattttcaaa atgcaccaat gttgtaaagg 1980 tgctatctac agcatgtact ctgttaagga gcctgtgtgt gaaggagaag gggactccac 2040 gacaaaagga gttttacagg ggcttgacaa tgctatatct gccctgacga gagttgggca 2100 aagtatgatt agtttcaaac ttggaagctt ttcatattat gccaagattg cacaagggtt 2160 tgatcaactt gctcgtggaa agagagcaat aggtgaactt actagttggc tcatcgatct 2220 tgttggaagt gtttattcta aagtctctgg acaagagagc actttttttg atgagttatc 2280 tactatagtt tgtcttgatg tcagatcgtg gctgcttaaa agtaagcgcg tgagactgca 2340 agttgaaaca atggccattg gggatagaat aacgcttgat actatctcca aactactgga 2400 agaaggccat aaaatccttg tcactgctgc gggtgtgccc aggaaaacct ctgctgattt 2460 tacaatgtgc atcaaagaag aggtttccaa gctggaagag gtacaccaaa gaactgcctg 2520 cgccggcata aatgaaggta tgcgccagtt tcctttctgg gtatacattt ttggcgcttc 2580 acagtctggg aagactacca ttgctaattc tgtcatcatt ccctctttgt tagaggagat 2640 gaatcttccc aagacttcag tatactccag gcccaaaaca gggggttttt ggagcggata 2700 tgctagacag gcgtgtgtca aagttgatga tttttatgct attgagcaaa cgcccagttt 2760 agcttcttct atgatagatg tggtgaattc tgaaccatat ccattggaca tggcctacct 2820 gcatgaaaag ggcatgtcca tggactcacc acttgtcgtg acgactgcaa atactgtgaa 2880 gcctcctacc aatgctggta ttactgatga ggcttctttc tttaatcgtc gcgccgctgt 2940 tatagaagtg aggagaaagg acaataccca ctttacaccc cgtgcatatg ataattgcat 3000 tgaagtgagg ttcctgcaca ataagtgtgc atacgttaat tctgagggtg ttccccaggg 3060 gcctgctgtc aataccccca tggaagaagg atgggtttct cccagcgaag ctgttgctac 3120 gctgaaaaat ttattgggag agcacgtcct tgctgaagaa gaaaagctgc tggattaccg 3180 tgagaggatt ggtaatgacc atcctattta taatgcagct caagagttca taggtaacat 3240 gcattatcca ggtcactgga taacaactga agacaaaaat acctatggaa tcaaggatga 3300 ggggttttcc ttccttgctg tggacggaaa aatgtacaag tataacgtgc ttggaaaatt 3360 aaacccctgt gaagttgttc caccacatcc caatgttatc ccttggttag aagagaaaac 3420 attaacaatg gtgcattggg atgtgcataa acatatagcc actggtccca ggaatgcttt 3480 agtttcctgc tttttgcagg gtcttgtgca ggaccagagt cgtgtccaga gtgtggagct 3540 catgggcaag gacagctcac ctgaacagca ggcgtttttt aagagattga gcctttctga 3600 gagaatatat ctcaggttgt gccaaattcg catagatgct gttaagaagg agcaactgag 3660 tgggccatct aggggaaccc tagatatttt gaaggactgt atggccaaga gtaaggctaa 3720 attagtagaa aattattctc tacttcttac tctggttgca gttcttgtgt taattgctac 3780 ggcctattca ctgatctcca ctctggtggg tctagccggg tgtacaagct ttgctggagg 3840 tttggtatca atgaagcaag tttctaatgc ttccatgcca tgctcagaac cccggttaga 3900 agaccgatat gcagctagaa accgttttgt gtcgcggatt tctagagcta gaggagacgg 3960 ccctgctaag ggccagggag aacacgaaga actagtcact gaactctatt attattttga 4020 tggggtgaag aggctcgttt cttgttgctg gtttaaaggg cgctcccttt tgatgactag 4080 acaccaagcg ttggccattc ctgtcggaaa tgaagtgcaa gttatttatg ctgacggcac 4140 tgataggaaa ctcgtatggc caggaaaaca ggaagacgga acctgcaagg gatacatcga 4200 attcccagag aatgaacttg ttgtatttga acatgctcgt ctgttgacga tgccaatcaa 4260 atatgaaaag tattttgttg atgatcccga ccgtcaaatt tctcccaatg tcgctgtcaa 4320 atgctgcgtg gcacgacttg aggaaggact cccccagttt catttctgga ataaatatgc 4380 cactgccaga agtgatgtgc ataccgttgt tgatgaaggg gggagtgcag tctaccagaa 4440 caaaattagg aggcatatta tatatgccca tgaagctaaa agaaatgatt gcggggctat 4500 tgctgttgct gaaatacagc gtactcccaa ggtcattgca atgctggttt ctggttctgg 4560 aaatataacc tattcttccg tgataccgaa ttacagctct tcttttgtca gaggagatgt 4620 accatatgtg ccggaagatg ggattaagac aaatgggtat aggaaagtag ggtatctgat 4680 gcgaaaagat gccccgcacg ttccaagcaa aacggcattc atgagagtgc cagatgagat 4740 ttgctttccc tacccaaatc caaagcagcc tgccatcctg agtgatgaag atgaacgttt 4800 aaagggtaca atccatgaag gatatactcc aattcgggat ggcatgagga agtttgctga 4860 accaatgcgc ctgcttgatg aaaaattgtt ggatgaagtt gcaggtgaca tggttcacac 4920 atggtttgaa gttggggaat ttcttgaaga tgtccctcta aatgttgcca ttaatggtga 4980 tgtggatgag gagtattttg accccatggc catggatacg tctgagggat atccagaagt 5040 ccttcagagg aaagcaggag aaaaagggaa agcccgcttt ttcattgggg aacctgggtc 5100 acgagaattt gtgcctgggt gcggaccaga aaaggcttat ttgagtctag aagaggaatg 5160 caaaatgcgt gtcccttctc ttataagtat cgaaacccca aaggatgaaa ggcttaagag 5220 atctaaaatt gagactccag gtacgagatt attttctgtg ctacctttag catataatct 5280 tctactgaga gttaaatttt tgtccttttc tcgcctgtta atgaagaaaa gaagctactt 5340 gccttgtcaa gtaggtatca acccctatag tcgtgaatgg actgatttat accaccgttt 5400 ggcagaaatg tcagatgtgg gttataattg cgactataaa gggtttgatg gcttgatcac 5460 ggagcaaata ttggctaccg ttgcaacaat gataaatgcg ggataccgca atcctgtgag 5520 caaccaacag cggtccaatc ttttgctagc tattagtggt cggctatcaa tctgtggaaa 5580 ccaggtctat gaaacagagg ctggtattcc ttctggttgc gctttaacag ttgttattaa 5640 ttccatattc aatgaactgt tgatgcgcta ctgtttcaag aaaattgtcc ctcccattta 5700 ccgggaatgc tttgatagat gtgttgtttt aatcacctat ggtgatgata acgtttttac 5760 tgtagcacag tctattatgg aaagctttac tggtgacgct cttaaagccg agatggctac 5820 tttgggagtg acgattactg atggcaagga taagagtctt gccacaattc cagcacgccc 5880 tctgctagaa ttggaatttt tgaagagagg gttcaagaaa ggagatggag gcatgatcta 5940 cgctcccctg gaaaaactgt ccatcatgag ttcactcgtg tatatccgta gtgatgggtc 6000 agatatgttg caaaaactag tcgacaatgt aaatagtgct ttggttgaat tgtttttgca 6060 tcaagatagg gagtatctgg aaagtgtccg aaatttctat cttgagaagc ttcctcctgg 6120 gtcttataaa gaactgacta cgtggtatca ggctcagtcc ttccatgaga gtcaactttg 6180 cggggaaagc aactggaaac cccagggatt gattgaaatt agtcatggtg ctggttttgc 6240 tagttttgtc caacaggatg gaacagagtt agaacgccat gatatttgcc ctgggctggc 6300 tatatctgga gctaggtata ttgccaaaag tgaagagata ttgttgtctc ttagctccct 6360 tttgccgggc gatgtcaatg tgcacaagct tgaccttaaa tgtggggatg gtattggccg 6420 tcttccctct aaagctagtg tattggcaca acggaaaccc ggaatcgtaa tgaggttatg 6480 caagcaggcc cttaatgaga aaaagactct tgtcattcgt gacgagagac cttatattgg 6540 aggttgggct atggcttgca tatgtggaga gagttttggt ttttccatta gggatacctt 6600 ggcattatat gccaatctgt tgggacctaa taggaaaaat gggctggcag gatatttctc 6660 aaattttgaa agtccagttc atgtgaagaa agttcacgcc atcactaacg gagaagaagg 6720 agctgctgag ttgaaagaag tgttcacttt ttgtgagcca agaattgttg cggcttcctt 6780 tggcgaaaca agaaaggaaa tgctggctca cccacctgag tcatttccta atgttgtatt 6840 agttggggga attagtttcc caaaagaagg tggggaacct ggagctttat actcccacac 6900 tgacatagtt atgtccaaga aaacaaaggg cgtgtatgtt agtgaggcca ttttgaagtg 6960 ttgtctaaga tgtcctggtg ttactaccaa gaccgttctt cagacttcta ccattgggag 7020 tagtctttcc aaggctcatt tgaagagttt gcgccaatta caaacgcacc aatgtgtgcg 7080 taggtgactc ttcatttaat taggcaagcc ggtagacttc gtgtgctgct accatggaac 7140 tacatggtct cgtatggtac tgggataacc atcaataaat aacccagttt tcgcactgct 7200 catgctcttg tgggtgcgtc atattcagag caatttgtgt tatatttata tttagcttgt 7260 ttactacttc tgtgtgttta atttcatgca tttagtggcg acagtgtgtt gtttgtcctt 7320 tggacacact tgccttgttg gacgcaaaaa gattttattt tctttttact gcttttgtag 7380 atttt 7385 //