ID FN543421; SV 2; linear; genomic RNA; STD; VRL; 3644 BP. XX AC FN543421; XX DT 20-JAN-2010 (Rel. 103, Created) DT 20-JAN-2010 (Rel. 103, Last updated, Version 1) XX DE Beet black scorch virus complete genome, isolate Ir-Ksh1, genomic RNA XX KW complete genome. XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3644 RA Mehrvar M.; RT ; RL Submitted (18-AUG-2009) to the INSDC. RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM. XX RN [2] RA Mehrvar M., Bragard C.; RT "Beet black scorch virus satellite is linked with a single 3' untranslated RT region and contain a partial Argonaute sequence"; RL Unpublished. XX DR MD5; 5983f00284f998b8261ff99cc4c9d907. DR EuropePMC; PMC6483173; 31022219. XX FH Key Location/Qualifiers FH FT source 1..3644 FT /organism="Beet black scorch virus" FT /host="Beta vulgaris" FT /isolate="Ir-Ksh1" FT /mol_type="genomic RNA" FT /country="Iran:Kermanshah, Dolah" FT /collected_by="Mohsen Mehrvar" FT /collection_date="Sep-2006" FT /db_xref="taxon:196375" FT CDS join(36..644,648..2210) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase, p82" FT /note="ORF2" FT /note="produced by translational readthrough of ORF1" FT /db_xref="GOA:D2TGC4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D2TGC4" FT /protein_id="CBH40100.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCTYGFY FT RTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP FT KPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERCQQAVESLAIRPIGVQ FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD FT RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL FT GVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQTR FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF FT MQFPLSAAPKTRSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA FT LENGFSRLSFDKLDQDIQEEVSLLQFSGA" FT CDS 36..647 FT /product="RNA polymerase, p23" FT /note="ORF1" FT /db_xref="GOA:D2TGC5" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D2TGC5" FT /protein_id="CBH40101.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCTYGFY FT RTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK" FT CDS 2228..2419 FT /product="7K protein A, p7a" FT /note="ORF3" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q8B5R7" FT /protein_id="CBH40102.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421..2618 FT /product="7K protein B, p7b" FT /note="ORF4" FT /db_xref="GOA:B3U3L9" FT /db_xref="UniProtKB/TrEMBL:B3U3L9" FT /protein_id="CBH40103.1" FT /translation="MGTIYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2434..2577 FT /product="5K protein A, p5a" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:D2TGC8" FT /protein_id="CBH40104.1" FT /translation="MLFAKNPQGSSCGHSLLQLCVSSDSYRTPHLKDLTTLITKIIRRR FT NT" FT CDS 2647..3345 FT /product="coat protein, p25" FT /note="ORF6" FT /db_xref="GOA:D2TGC9" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2TGC9" FT /protein_id="CBH40105.1" FT /translation="MAPKRNKGGRKIRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 3410..3547 FT /product="5K hypothetical protein B, p5" FT /note="ORF7" FT /db_xref="UniProtKB/TrEMBL:D1GV46" FT /protein_id="CBH40106.1" FT /translation="MEDCLHDAGMLSHTVRYRCWILVNRLDRFGWFQTDVSLEIFIVLS FT " XX SQ Sequence 3644 BP; 914 A; 859 C; 934 G; 937 T; 0 other; aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg tacgtgatcc 60 tgcgcatact tgattttatc tttcactcca tcttctttcc atcccttctc tttatcatca 120 aacacaacac caccatccta tgggcttgtc tatgtaccta tgggttctac cgtactttcc 180 gcctagtctt caagatcaag gttgaggtac acccagccac ccgtgctgtc tttaaggaca 240 tggtcacccg tttccagcgg gagagtatgt tctcacccga cgatgaagtg cctgagggca 300 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat attaagaggg 360 tccgagctag caggcgagtc tcatacgctg tgagggttgc tcatgtagcc aagtcaaagg 420 tgggactact cgcgaacacc aaggcaaatg agctggtgta ttctcggctt tgtcgagatg 480 agatggttac ccacggtgtg cgcccatcac acattgcgca tgcagtgccg ctcgctgtcg 540 cggcctgctt tattccactg gacagtgatt tcttggcagc atcaattaga aactgccagg 600 agatggaaga gcggagggcc gttttagggc cctcatatgg aaaataggga ggcctactct 660 gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc agagggtttg ctggtgaaga 720 gaggaccacc tctggccaaa cccagaaaac tgtaccgttt ttctggattt gggactcata 780 tacggtacgg agtgcacgat cactccttgg gcaatgttcg gaggggactt gtcgagcggc 840 tattcatggt agagaccaag gatggtcttg ctccgacacc aaagcccacc cctggcgtgt 900 atgccaagtt atcccggttc catgaccttg ttagtgctaa tctaacctcg accaccagat 960 taacatacga gcaattcctc ggattttatt ctggtcgcaa attggagagg tgccaacagg 1020 ctgtggagtc gttagcaatc cgccctatag gggtccagga tgcttggctc agcacgttcg 1080 ttaaggctga aaaactcaac atctcagcta aacccgaccc ggcacctagg gtcattcagc 1140 ccaggtcgcc gcggtacaat gtggaggttg gacggttcct cagacatgct gaggaacatc 1200 tgttcgatgc tattaaccgt gtgtatggtg gacggacagt attcaagggg ttgaatgctg 1260 atcaggctgg catggagatg caagccatgt ggcaagaatt tgacaatcct gtcggtattg 1320 gcatggacgc ctctcggttt gatcaacacg tttccaagga ggcgttggag ttcgaacaca 1380 agatatggtt gtccatgtac catggctctg acaggaaaac attggcaaag ctgttgggga 1440 tgcaaatcca caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg 1500 aagggtgtcg tatgtctgga gacattaaca cctcttccgg caactgttat ataatgtgcg 1560 caactgtgca caattattgc agccggttgg gtgttaagag gttcaggctt gccaacaatg 1620 gtgatgattg catgctagtc gtggaagcta aggatgaagc gcgtgtaagg caagggctta 1680 ttgaatacta tagggagttg ggattcacaa tgaaagtgga acccactgtc tatgaacttg 1740 agcatcttga gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc 1800 gcaatctaca ccagggcatg tcgaaggacc tacactcctt gcatgatctt ggaagtagga 1860 aagctgccga ggcatgggtc tcagcagttg gcagtggggg acgagtgatg aatgacgggg 1920 tgcctgtact caagtcgttc tttatgcagt ttcccctttc tgctgctcct aaaaccaggt 1980 ctgatatgag tatagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2040 ttagaaattt agcacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgt 2100 tgccagatga acagattgcc ctggaaaacg gattttctcg tctgagtttt gataaactag 2160 accaggatat ccaggaggag gttagccttc tccagttttc tggggcatga aaacctaacc 2220 acttttcatg gaacaacagc gtagtgaaca gcgtcgtgaa cgtagggtga gaagcagatc 2280 ggaggacagg aagtctatgt ctgatgtggg acagtctgca gtcaataggg aagcagacgt 2340 caagaaagac atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac 2400 acaacatttc cacttctgaa atgggcacaa tctatgttgt tcgcgaagaa ccctcagggt 2460 tcctcgtgtg ggcattcgtt gttgcaattg tgtgtatcat cggactctta tcgtacaccc 2520 cacctgaaag acttaaccac tcttatcacg aaaataatca gaagacgcaa tacataacta 2580 ttggaggagc atccactagt aaggtttcca cgaactgaat ttactgcttt ctagtataga 2640 taataaatgg cacctaaacg caacaaagga ggtaggaaga tccgcatgtc cgatgagacg 2700 gtgcgagctc ctgctgctgg tggtgtgata caacgcacac ccggtattcc cccacgtatt 2760 aggtccacca ctattggtac gcgagtatcc aacacagaat tacttgctgg tgtcaatgtt 2820 gcagcagcag gtgcattttc tgtcgttgga gccggtcttt tccctagcaa ccttggttgg 2880 cttaatggga ttgcttccaa ttacagcaag tttagatggc tttctataaa gctcatctat 2940 attcccattg tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg 3000 gctgatgcta cacctaccag cttccaacaa gtgcaacaga tgtataacag cataactgca 3060 cctgtatggg ctggatttga tggagctact gttcagctat tgggggatcg cccaacaact 3120 ggtgccgtgt gtatcgacgt tgatgtcaat cgatttggat tcacatggta caggtacgca 3180 accttagccg ctatcacagc actcactgca aacgacagga atctgtatat tcctagcgtt 3240 tgcaatgtgg ctacttctgg cggatcagct gcgactaatg ttggcaactt aatgataaag 3300 tacagcattg agctcattga gcccataccc gctgccatca attagacccc acatcctggt 3360 gtggttaatc cagtgaaaaa tattaggaaa tccatgggat tcacacccca tggaggattg 3420 cttgcatgat gcaggtatgc ttagtcacac tgtgaggtat cgatgctgga tcctggtaaa 3480 caggcttgac aggtttgggt ggttccaaac cgatgtatca ctcgagatat tcatagtact 3540 aagctagaaa acatcatgcg tgcgcacacg gccggctacg tcctatcgta gtcgggggct 3600 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc 3644 //