ID FM876848; SV 1; circular; genomic DNA; STD; VRL; 2779 BP. XX AC FM876848; XX DT 20-JAN-2009 (Rel. 99, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 3) XX DE Pepper yellow vein Mali virus complete genome, isolate Burkina DE Faso-Bazega-hot pepper1-2007 XX KW complete genome. XX OS Pepper yellow vein Mali virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2779 RA Tiendrebeogo F.; RT ; RL Submitted (19-NOV-2008) to the INSDC. RL Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de RL Ouagadougou, 03 BP 7131 Ouagadougou 03, BURKINA FASO. XX RN [2] RX DOI; 10.1007/s00705-010-0854-2. RX PUBMED; 21080204. RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore V.S., Barro N., RA Perefarres F., Reynaud B., Traore A.S., Konate G., Lett J.M., Traore O.; RT "Molecular and biological characterization of pepper yellow vein Mali virus RT (PepYVMV) isolates associated with pepper yellow vein disease in Burkina RT Faso"; RL Arch. Virol. 156(3):483-487(2011). XX DR MD5; 166847c94664315f9aed99d4dc1eb95c. XX FH Key Location/Qualifiers FH FT source 1..2779 FT /organism="Pepper yellow vein Mali virus" FT /host="Capsicum frutescens" FT /strain="Mali" FT /isolate="Burkina Faso-Bazega-hot pepper1-2007" FT /mol_type="genomic DNA" FT /country="Burkina Faso" FT /lat_lon="11.58 N 1.26 W" FT /collected_by="Fidele Tiendrebeogo" FT /collection_date="Nov-2007" FT /db_xref="taxon:260378" FT CDS 139..489 FT /gene="V2" FT /product="movement protein (MP)" FT /db_xref="GOA:B8ZWL4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B8ZWL4" FT /protein_id="CAS97471.1" FT /translation="MWDPLLNEFPDSVHGFRCMLAIKYLQAVEDSYEPNTLGHDLIRDL FT ICVIRARDYVEATRRYNHFHSRLEGSSKAELRQPIQQPCCCPHCPRHKQASIMDLPAHV FT SKAQDVQNVQKP" FT CDS 299..1075 FT /gene="CP" FT /product="coat protein (CP)" FT /db_xref="GOA:B8ZWL5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B8ZWL5" FT /protein_id="CAS97472.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAVVPIAQGTNKRRSW FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH FT RVGKRFCIKCIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1072..1476) FT /gene="C3" FT /product="replication enhancer protein (REn)" FT /db_xref="GOA:B8ZWL6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B8ZWL6" FT /protein_id="CAS97473.1" FT /translation="MDSRTGEHITARQAKNGVFIWEINNPLYFTITNHDIRPFNMNQDI FT LTLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVLKYLNNLGVISINN FT VIRAVDHVLYVVLVNTISVMENHEIKFNVY" FT CDS complement(1217..1624) FT /gene="C2" FT /product="transcription activator protein (TrAP)" FT /db_xref="GOA:B8ZWL7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B8ZWL7" FT /protein_id="CAS97474.1" FT /translation="MQPSSPSTGHSTQIPIKVLHRRAKTKAIRRKRIDLDCGCSYYLHI FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRHQTIQHEPRHPHTPNTIQSQ FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKSL" FT CDS complement(1548..2612) FT /gene="C1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:B8ZWL8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B8ZWL8" FT /protein_id="CAS97475.1" FT /translation="MAPPKRFKINSKNYFLTFPKCSLTKEEALEQLLNLSTPTNKKFIK FT VCRELHTNGEPHLHVLLQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV FT EKDGDTLEWGVFQVDGRSARGSCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQFH FT NLKNNLDRIFQEPPAPYVSPFLLSSFSQVPEELEEWVSENVMGAAARPWRPNSIVVEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRNW FT QSNTKYGKPIQIKGGIPCIFLCNPGPTSSYKEFLEEPKNYALKSWTLKNATFVTLDRPL FT YSDTNQGSPPQSKD" FT CDS complement(2198..2455) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B8ZWL9" FT /protein_id="CAS97476.1" FT /translation="MGNLISTCFCSSRGNTSARITDSSTWYPQPGQHISIQTFRELNQA FT PTSSPTSRRTETPLNGGYSRSTAEVLGEAAEMLTTQRQRP" XX SQ Sequence 2779 BP; 722 A; 567 C; 648 G; 842 T; 0 other; accggatggc cgcgcccccg aaaaagaaat gggccccacg cactaatttg tgtcgaccaa 60 tcatatcgca gcctgaaagg ctagatattt gtgttttgcc tttatatact tggtcaccaa 120 gtatgggctt tatgcatcat gtgggatcca cttttgaacg agtttcctga ctctgttcac 180 ggatttcgtt gtatgctagc catcaaatat ttgcaggctg tggaggacag ttacgagccc 240 aatactttgg gccacgattt aattagggat cttatttgtg ttattagggc tcgagactat 300 gtcgaagcga cccggcgata taatcatttc cactcccgtc tcgaaggttc gtcgaaggct 360 gaacttcgac agcccataca gcagccgtgc tgttgtcccc attgcccaag gcacaaacaa 420 gcgtcgatca tggacctacc ggcccatgta tcgaaagccc aggatgtaca gaatgttcag 480 aagccctgat gtccctcgtg gttgtgaagg tccgtgtaag gttcagtcct acgaacagag 540 ggatgatgtt aagcacactg gtattgttcg gtgcgttagt gatgtcacac gtggccctgg 600 tattactcat cgtgtaggaa agagattttg tattaagtgt atatatattt tgggtaagat 660 ttggatggat gaaaatatca agaagcagaa tcacactaac caggttatgt tttttttagt 720 ccgtgataga aggccctatg gaactagccc acaggatttt gggcaggttt ttaacatgtt 780 cgataatgag cccagtactg ctacggtgaa gaatgatttg cgtgatcgtt atcaagtcct 840 caggaaattc catgctacgg tagttggtgg accctctggg atgaaagagc aggctttagt 900 caagaggttt tttagggtta acactcacgt cgtttacaat catcaggaag cagcgaaata 960 tgagaatcat actgagaatg cgttgttgtt gtatatggca tgtacacatg cctcgaaccc 1020 tgtgtatgct acgcttaaga tacgcatcta tttttatgat gccgttacga attaataaac 1080 attgaatttt atttcatgat tttccataac ggaaatcgta tttacaagta caacatataa 1140 cacatgatca actgctctaa tgacattatt gatagaaatt acacctaaat tattcaaata 1200 ctttaaaact tggaacctaa agactcttaa gaaaagacca gtctgaggcc gtaaggtcgt 1260 ccagaccttg aagttgagaa aacatttgtg aatccccagt gccttcctga ggttgtgatt 1320 gaatcgtatt tggagtgtga ggatgtcttg gttcatgttg aatggtctga tgtcgtggtt 1380 tgttatcgtg aaatagaggg gattgtttat ctcccatata aaaacgccat tctttgcttg 1440 acgagcagtg atgtgttccc ctgtgcgtga atccatggtt gatgcagtcg atgtggaggt 1500 agtatgaaca gccgcagtcg aggtctattc gcttacggcg aatggcttta gtctttgctc 1560 tgcggtggag aaccttgatt ggtatctgag tagagtggcc tgtcgagggt gacgaaggtt 1620 gcattcttga gtgtccagct cttgagtgcg taattcttcg gctcttctag gaattcttta 1680 tatgaggatg ttgggcctgg attgcagagg aagatacagg gaattccgcc tttaatttga 1740 attggcttcc cgtactttgt gttgctttgc cagttcctct gggccccaaa gaattccttc 1800 caatgcttta gataatgcgg atcgacgtca tcaatgacgt tataccatgc atcattagaa 1860 taaacctttg gacttaagtc taaatgacca cataagtaat tatgtggccc taatgaccga 1920 gcccaaacag ttttgccggt acgactatcg ccctctacta caatactatt aggcctccat 1980 ggccgcgcag cggcacccat gacattctca gacacccact cttcaagttc ttctggaact 2040 tgactaaaag aagacaaaag aaaaggagaa acataaggag ccggtggctc ttgaaaaatc 2100 ctatctaaat tattctttaa attatgaaac tgaaaaataa attctttagg gagtttctcc 2160 ctaataatag ccatagcggc ttcagcggaa tctgcattta aggcctctgc cgctgcgtcg 2220 ttagcatttc ggcagcttcc cctagcactt ctgccgtcga cctggaatac cccccattca 2280 agggtgtctc cgtccttctc gacgtaggac ttgacgtcgg agcttgattt agctccctga 2340 atgtttggat ggaaatgtgc tgacctggtt ggggatacca ggtcgaagaa tctgttattc 2400 gtgcactggt atttcccctc gaactgcaga agcacgtgga gatgaggttc cccattcgtg 2460 tgcaactctc tgcagacttt gatgaatttt ttatttgttg gggttgagag atttagaagt 2520 tgctctaagg cttcctcttt agtgagggag cattttggga aagtcaggaa ataatttttg 2580 gaatttattt taaaacgctt tggaggagcc atttggtcaa tgtaccccga ttgacctctc 2640 ttggcatctg gcgcctacaa tcggtgtaat ggggtacaat atatactcat acccctaatg 2700 gcattctggt aatttggtaa aggtattttt actttaattt gaatttcaaa tttcttttag 2760 cggccatcca tataatatt 2779 //