ID   FJ600483; SV 1; circular; genomic DNA; STD; VRL; 2609 BP.
XX
AC   FJ600483;
XX
DT   07-MAY-2009 (Rel. 100, Created)
DT   07-MAY-2009 (Rel. 100, Last updated, Version 1)
XX
DE   Malvastrum yellow mosaic Helshire virus isolate Ma179A5 segment DNA-A,
DE   complete sequence.
XX
KW   .
XX
OS   Malvastrum yellow mosaic Helshire virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2609
RA   Graham A.P., Roye M.E.;
RT   "Molecular characterization and phylogeny of two begomoviruses infecting
RT   Malvastrum americanum in Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-2609
RA   Graham A.P., Roye M.E.;
RT   ;
RL   Submitted (30-DEC-2008) to the INSDC.
RL   Biotechnology Centre, University of the West Indies, 2 St. John's Close,
RL   Mona Campus, St. Andrew, Jamaica
XX
DR   MD5; cb8e58e526be36d15144486c29b20234.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2609
FT                   /organism="Malvastrum yellow mosaic Helshire virus"
FT                   /segment="DNA-A"
FT                   /host="Malvastrum americanum"
FT                   /isolate="Ma179A5"
FT                   /mol_type="genomic DNA"
FT                   /country="Jamaica"
FT                   /collection_date="2005"
FT                   /clone="pMa179A5"
FT                   /db_xref="taxon:643133"
FT   CDS             192..947
FT                   /codon_start=1
FT                   /product="CP"
FT                   /note="coat protein; encapsidation"
FT                   /db_xref="GOA:C3UP41"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:C3UP41"
FT                   /protein_id="ACQ57339.1"
FT                   /translation="MSKRDAPWRSMAGMSKVRRTLNYSPRAGLGPRNNKAAEWVNRPMY
FT                   RKPKIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI
FT                   KNDLRDRFQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(944..1342)
FT                   /codon_start=1
FT                   /product="REn"
FT                   /note="replication enhancer protein"
FT                   /db_xref="GOA:C3UP42"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:C3UP42"
FT                   /protein_id="ACQ57343.1"
FT                   /translation="MDSRTGELITAPHAENGVYIWEIENPLYFRIYRVVDLLYTRTRVY
FT                   NIQIRFNHNLRKVLGLHKAYLNFQVWTTSMTASGSTYLVRFRRLVNMYLDELGVISLNN
FT                   VIRAVRFATDRVYVRYVLENHEIKLKFY"
FT   CDS             complement(1089..1478)
FT                   /codon_start=1
FT                   /product="TrAP"
FT                   /note="transcription activator protein"
FT                   /db_xref="GOA:C3UP43"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:C3UP43"
FT                   /protein_id="ACQ57342.1"
FT                   /translation="MRSSSPSQPPCIKKAHRQAKRRAIRRRRIDLECGCSIYFHIGCTG
FT                   HGFTHRGTHHCTSCREWRVYLGDRKSPLFQDIQSSGPAIHQNKGVQYPDTIQPQPEESV
FT                   GSPQSLPELPSLDDIDDSFWVNLFS"
FT   CDS             complement(1390..2475)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="replication-associated protein"
FT                   /db_xref="GOA:C3UP44"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:C3UP44"
FT                   /protein_id="ACQ57341.1"
FT                   /translation="MPRKGVFSIKAKNYFITYPRCSLGKEEALEQLRKIHTPVNKKFIK
FT                   ISREFHENGEPHLHVLMQLEGKFNCTNNRLFDMVSPTRSAPFHPNIQGARSSSDVKSYV
FT                   AKDGDTIEWGVFEIDGRSARGGQQTANDAAAEALNAGTKEEAMKIIKEKLPEKFLFQYH
FT                   NLSSNLDRIFMKAPEPWSPPFPLSSFTNVPDEMQEWSDSYFGRGAAARPERPVSLIVEG
FT                   DSRTGKTMWARALGPHNYLSGHLDFNSKVFSNDVEYNIIDDVAPHYLKLKHWKELLGAQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENIGLRNWTLKNAIFITLT
FT                   APLYQEGTQASQEEGHQEAQD"
FT   CDS             complement(2061..2318)
FT                   /codon_start=1
FT                   /product="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:C3UP45"
FT                   /protein_id="ACQ57340.1"
FT                   /translation="MGSLISMCSCSSKASSTARITDSSTWCPQPGQHLSIQTFRELGRA
FT                   PMSSPMSRKTVTPSNGECSRSTEEVLVAVSRQLMMQPPRR"
XX
SQ   Sequence 2609 BP; 630 A; 622 C; 606 G; 751 T; 0 other;
     accggatggc cgcgcgattt ttcccttttg ttcccccctt tggtttctca cgcgcgcttc        60
     gcttttctca ctcgcgctct tgtccaatca tattccgcct accgcgccta gatatttcaa       120
     acaacttggg ccctaagttg ttgtctggcc tatatatgaa aagcgtattg ggccattgtg       180
     tctaacccaa tatgtctaag cgggatgccc catggcgttc aatggcggga atgtcaaagg       240
     tccgccgtac tctaaattac tcccctcgtg caggtttggg ccctaggaac aacaaggccg       300
     ctgagtgggt caacaggccc atgtacagga agcccaagat ctatcggacg ctaaggactc       360
     ccgatgtgcc cagaggatgt gaaggcccat gcaaggtcca gtcctatgaa cagcgtcatg       420
     acatctccca cgttggcaag gtgatgtgta tttctgatgt cacccgtggt aatggcatta       480
     cccaccgtgt gggtaagcgt ttctgtgtta agtctgtgta tattttaggg aagatatgga       540
     tggatgagaa catcaagctc aagaaccaca cgaacagtgt catgttctgg ttggtcaggg       600
     accgtcgacc ctatggcact ccaatggact ttggccaggt gttcaacatg tatgacaacg       660
     agcctagcac tgccacgatt aagaacgatc tcagggatcg ttttcaggtt atgcacaggt       720
     tctatggcaa agtcactggt ggacaatatg ccagcaacga gcaggctttg gtcaggcggt       780
     tttggaaggt caacaatcat gtggtctaca accaccaaga ggctggcaaa tacgagaatc       840
     acactgagaa tgccttatta ttgtacatgg catgtactca tgcttctaac cccgtgtatg       900
     caacattgaa aattcgaatc tatttctacg attcgataac taattaataa aattttaatt       960
     ttatttcatg gttttcaagt acatatctta cataaactcg gtctgttgca aaccgaacag      1020
     ccctaattac attgttaagt gaaattacac ctaactcgtc taaatacata ttaactaagc      1080
     gtctaaacct aactaaataa gttgacccag aagctgtcat cgatgtcgtc cagacttgga      1140
     agttcaggta ggctttgtgg agacccaaca ctttcctcag gttgtggttg aatcgtatct      1200
     ggatattgta cacccttgtt ctggtgtata gcaggtccac tactctgtat atcctgaaat      1260
     agaggggatt ttctatctcc cagatataca cgccattctc tgcatgaggt gcagtgatga      1320
     gttcccctgt gcgtgaatcc atgtcctgta cagcctatgt ggaagtagat ggagcacccg      1380
     cactctagat caatcctgcg cctcctgatg gccctcctct tggcttgcct gtgtgccttc      1440
     ttgatacagg ggggctgtga gggtgatgaa gatcgcattc ttgagagtcc agttcctgag      1500
     acctatgttt tcctctttgt ctaggaaatc tttatagctg gcaccctcac caggattgca      1560
     aagcacgatt gatgggatcc cgcctttaat ttgaactggc ttgccgtact tgcaatttga      1620
     ttgccagtct ttctgggccc ccagaagctc tttccagtgc tttaacttta gataatgcgg      1680
     tgcgacatca tcaatgatgt tatactccac atcgtttgag aagacttttg aattaaagtc      1740
     taggtggcca ctgagataat tatgtgggcc taaggcacga gcccacatcg tcttccctgt      1800
     cctcgagtca ccttctacaa tgagacttac tggtctctcc ggccgcgcag cggcacctct      1860
     cccaaaataa ctgtccgacc attcttgcat ctcgtccggc acgttagtga aagaggagag      1920
     gggaaacgga ggagaccatg gctccggagc cttcatgaaa atcctatcga ggttactgga      1980
     taggttatga tactggaaaa gaaacttctc cggcaacttc tctttgatga ttttcatggc      2040
     ctcctccttt gttccagcat ttaacgcctc ggcggctgca tcattagctg tctgctgacc      2100
     gccacgagca cttcttccgt cgatctcgaa cactccccat tcgatggtgt caccgtcttt      2160
     cgcgacatag gacttgacat cggagctcga ccgagctccc tgaatgtttg gatggaaagg      2220
     tgctgacctg gttggggaca ccatgtcgaa gagtctgtta ttcgtgcagt tgaacttgcc      2280
     ttcgagctgc atgagcacat ggagatgagg ctccccattt tcgtgaaact ctcgtgaaat      2340
     tttgataaat ttcttattta ctggtgtatg gatttttcta agttgttcta aggcttcctc      2400
     tttgccaaga gagcaacgag ggtatgtgat gaaatagttt ttggctttaa tagaaaatac      2460
     tcctttccgt ggcattttct gtaaatattg gtgttccccc aattgctctc tcgctcaaaa      2520
     ctcttgtgaa ttgggggaaa tgggggaaaa catatagtag aagttccatg ggttagatct      2580
     gccacgtggc ggccatccgc tataatatt                                        2609
//