ID FJ469627; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC FJ469627; XX DT 29-DEC-2008 (Rel. 98, Created) DT 25-FEB-2009 (Rel. 99, Last updated, Version 2) XX DE Cotton leaf curl Gezira virus-[okra:Niger] clone NG2FL segment A, complete DE sequence. XX KW . XX OS Cotton leaf curl Gezira virus-[okra:Niger] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RX DOI; 10.1007/s00705-008-0304-6. RX PUBMED; 19156351. RA Shih S.L., Kumar S., Tsai W.S., Lee L.M., Green S.K.; RT "Complete nucleotide sequences of okra isolates of Cotton leaf curl Gezira RT virus and their associated DNA-beta from Niger"; RL Arch. Virol. 154(2):369-372(2009). XX RN [2] RP 1-2762 RA Shih S.L., Kumar S., Lee L.M., Green S.K.; RT ; RL Submitted (17-NOV-2008) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Taiwan, RL Republic of China XX DR MD5; 7224c8d838145dfd5b69a074ae44d24a. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Cotton leaf curl Gezira virus-[okra:Niger]" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Niger:Sadore (45km from Niamey)" FT /isolation_source="Okra" FT /collection_date="2007" FT /clone="NG2FL" FT /db_xref="taxon:502871" FT gene 161..529 FT /gene="V2" FT CDS 161..529 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PIY0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PIY0" FT /protein_id="ACK77817.1" FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVVLCTCPHCPRHKQTSGLDQQAHV FT QKTEDVQNVSQPRCPKGM" FT gene complement(294..851) FT /gene="C5" FT CDS complement(294..851) FT /codon_start=1 FT /gene="C5" FT /product="C5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B8Y3K9" FT /protein_id="ACK77814.1" FT /translation="MITEIILDRSSARFVVKHVENLTEIQRGIPIRSSITDKEKHDIVG FT VILLLNVVIHPYLTKNINGFDSETLSSTVGKTNPLSNVRHTSDNTRMLDIITLFIGLDL FT TRTFTSLWDIWAAIHSVHPRFSVRGPVGPGPTFVCDEDSGGTCRGQPWAVEVQTATHFR FT GGSGNDDICWSLRHSWYDEQLR" FT gene 321..1097 FT /gene="V1" FT CDS 321..1097 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PIY2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B1PIY2" FT /protein_id="ACK77813.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW FT TNRPTYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTKGVGLTH FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN FT EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFFRINSQIVYNHQEAGKFE FT NHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1094..1495) FT /gene="C3" FT CDS complement(1094..1495) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:B1PIY3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PIY3" FT /protein_id="ACK77816.1" FT /translation="MDSRTGELITAHQSENGVLIWTINNPLYFKTIKEFRLTHGNQTMI FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV FT IRAVNHVLYNVLQTTVASEFTHNIQIKLY" FT gene complement(1239..1643) FT /gene="C2" FT CDS complement(1239..1643) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:B1PIY4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PIY4" FT /protein_id="ACK77815.1" FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF FT TCRDNGFTHRGTHHCASEREWRTYLDNQQSPVFQNHQGVSSNARESNNDRDADKIQLQP FT QEGIGDSQMFHELPGLDDLTPSDWSFLKRI" FT gene complement(1543..2631) FT /gene="C1" FT CDS complement(1543..2631) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PIY5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PIY5" FT /protein_id="ACK77812.1" FT /translation="MPPSKRFLINAKNYFLTFPKCSLTKEEALEQLQKISTASNKKYIK FT ICRELHEDGQPHLHVLLQFEGKFKCQNHRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKTEALRVIRELAPKDFVLQFH FT NLNSNLERIFQEPPAPYVSPFLSSSFNQVPEELEEWAAENVVEAAARPDRPISIVIEGE FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNPL FT YSGTNQSPASGGQEESNQETQD" FT gene complement(2172..2474) FT /gene="C4" FT CDS complement(2172..2474) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PIY6" FT /protein_id="ACK77818.1" FT /translation="MANLISMCFSSSKGSSNAKIIDSSTWYPQIGQHISIQTFRELNQA FT PTSSPTSTRMETHSSGENSRSTEDLQEGDNRQPMTLTPQRLTQEVRQRLLELYGN" XX SQ Sequence 2762 BP; 689 A; 621 C; 613 G; 839 T; 0 other; accggtgggc gcgaaaaaaa aagtggaccc cgccccacgt gaacatgtcg cgcgagtgct 60 gaacatgtcg cgcgatgctg tccaatcaga acgcgcgctc tacgcattat aatttgaaat 120 ttgaaatata tacttgctcc ccaagttgtc cgccataact atgtgggatc cgttattgaa 180 cgacttccct gaatccgttc acggtttccg ttgtatgctc gccgtgaaat atttgcaggc 240 tgttcgtgag tcgtacgatc cttccactct tggttacgat cttcttagcg atctcatcgg 300 agttgttcgt cgtaccaact atgtcgaagc gaccagcaga tatcatcatt tccactcccg 360 cctcgaaagt gcgtcgccgt ctgaacttcg acagcccagg gttgtcctct gcacgtgccc 420 ccactgtcct cgtcacaaac aaacgtcggg cctggaccaa caggcccacg tacagaaaac 480 cgaggatgta cagaatgtat cgcagcccag atgtcccaaa gggatgtgaa ggtccttgta 540 aggtccagtc ctatgaacag cgtgatgata tcaagcatac gggtattgtc cgatgtgtgt 600 ctgacgttac taagggggtt ggtcttaccc accgtactgg aaagcgtttc actatcaaat 660 ccatttatat tcttggtaag gtatggatgg atgacaacat taagaagcag aatcacacca 720 acaatgtcat gtttttcctt gtccgtgata gaagaccgta tgggaattcc ccgttggatt 780 tcggtcaagt tttcaacatg tttgacaacg aacctagcac tgctacggtc aagaatgatc 840 tccgtgatca ttttcaagta ttgaggaagt ttactgcaac tgttattggt ggtccttcag 900 gaatgaaaga acaagccctt gttcgtcgtt tttttaggat taatagtcag attgtgtaca 960 accatcaaga ggctggtaaa ttcgagaatc atacggagaa tgctatattg ttgtatatgg 1020 catgtactca tgcctcaaac cctgtgtatg ctacgttaaa gatacggatc tacttctacg 1080 attcggtatc taattaatat aattttattt gaatattgtg cgtgaattca cttgccacag 1140 ttgtttgcaa tacattgtac aaaacatgat tgactgccct aattacattg ttaattgaaa 1200 ttacgcctaa tctatacaaa tatttcataa tctgcttcct aaatacgttt aagaaaagac 1260 cagtcggagg gcgtgagatc gtccagaccc ggaagttcat gaaacatttg tgaatcccca 1320 attccttcct gaggttgtag ttgaatctta tctgcatctc tatcattgtt tgattcccgt 1380 gcgttagacg aaactccttg atggttttga aatacagggg attgttgatt gtccagataa 1440 gtacgccatt ctcgctctga tgcgcagtga tgagttcccc tgtgcgtgaa tccattgtct 1500 ctgcacgtga aggctacgta taccgtgcaa ccacacggga tgtcaatcct gcgtctcctg 1560 attgctctct tcttggcctc ccgatgctgg actttgattg gtacctgagt acagcggatt 1620 tgagagggtg atgaaggtcg cattctttaa tgcccaggat ttgagatgcg cgtttttctc 1680 ctcgtctaaa tactctttat aggaggaatt gggacctgga ttgcagagga agattgttgg 1740 gatgcctcct ttaatttgaa ctggtttccc gtatttcgtg ttgctttgcc agtccttttg 1800 tgcacccatg aattccttaa agtgtttcag ataatgcggg tcaacatcat ctatgacgtt 1860 ataccatgcg tcattactga acacctttgg gctcagatca agatggccgc acaaataatt 1920 gtgaggccca agacttctgg cccatacggt cttccctgtt ctgctttctc cttcaatcac 1980 tatactaatc ggtctatctg gccgcgcagc ggcctcaacc acgttctccg ccgcccattc 2040 ttcaagttct tctggaactt ggttgaaaga agaagataaa aaaggagaaa cataaggagc 2100 tggaggctcc tgaaaaatcc tctctaaatt actatttaaa ttatgaaatt gtaaaacaaa 2160 atctttggga gctaattccc gtataactct aagagcctct gtcttacttc ctgcgttaag 2220 cgctgcggcg taagcgtcat tggctgtctg ttgtccccct cttgcagatc ttccgtcgat 2280 ctggaattct ccccactcga gtgtgtctcc atccttgtcg atgtaggact tgacgtcgga 2340 gcttgattta gctccctgaa tgtttggatg gaaatgtgct gacctatttg gggataccag 2400 gtcgaagagt ctatgatttt ggcatttgaa cttcccttcg aactggagaa gcacatggag 2460 atgaggttgg ccatcctcgt gaagctctct gcagatcttg atatactttt tgtttgaagc 2520 tgtgctgatt ttctgtagtt gttctagtgc ttcttcttta gtgagagaac attttgggaa 2580 agtcaggaaa taattcttgg catttattag aaagcgttta gagggtggca ttgacttggt 2640 caatcgggtc tcagatactt ctcccctgta tattgggtct caatatatag tgagacccaa 2700 atggcattat ggtaataatc ccaacaaatt tgaaccccca tagcgcccac cgttctaata 2760 tt 2762 //