ID FJ390404; SV 1; linear; genomic RNA; STD; VRL; 2073 BP. XX AC FJ390404; XX DT 16-DEC-2008 (Rel. 98, Created) DT 16-DEC-2008 (Rel. 98, Last updated, Version 1) XX DE Soybean dwarf virus isolate Pike minor coat protein, coat protein, and P4 DE genes, complete cds. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-2073 RA Thekke Veetil T., Hobbs H.A., Domier L.L.; RT "Sequence diversity of s of Soybean dwarf virus isolates from the RT midwestern United States"; RL Unpublished. XX RN [2] RP 1-2073 RA Thekke Veetil T., Hobbs H.A., Domier L.L.; RT ; RL Submitted (16-OCT-2008) to the INSDC. RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave., RL Urbana, IL 61801, USA XX DR MD5; 53ea61c202e774eb1925ec0a7f834444. XX FH Key Location/Qualifiers FH FT source 1..2073 FT /organism="Soybean dwarf virus" FT /host="Glycine max (soybean)" FT /isolate="Pike" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Aug-2007" FT /db_xref="taxon:12049" FT CDS 1..2073 FT /codon_start=1 FT /transl_except=(pos:601..603,aa:OTHER) FT /product="minor coat protein" FT /note="readthrough protein; translated by readthrough of FT in-frame termination codon" FT /db_xref="GOA:B7TWD4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B7TWD4" FT /protein_id="ACJ24834.1" FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYSIRDQRVRYIEDENANWTNIQAQWYS FT QNSVEAIPMFIYPVPQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQKKVWNVG FT VQNNVTISNNKADADWKYGHPNLTINGERFDQNQVVEKDGTISFHLVTTGPNASFFLVG FT PPVKKIAKYNYCISYGAWTDRDMEFGMVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRS FT HRLQEMPPMREDFSEEDNSSSDSNTYKTDNSPLTVHLVKAGDEEIYTTDRSDDAEPTLH FT DADVMKFSGFVGAKDRFTLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDP FT WSGIKIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPTPRFEPAPKSVLDRIRRRQV" FT CDS 1..603 FT /codon_start=1 FT /product="coat protein" FT /note="major capsid protein" FT /db_xref="GOA:Q3YB88" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3YB88" FT /protein_id="ACJ24832.1" FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK" FT CDS 17..586 FT /codon_start=1 FT /product="P4" FT /note="putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B7TWD6" FT /protein_id="ACJ24833.1" FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSKPTMNIRSRVSY FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV FT KTNSRSTIRGTETPRSQAPSRSRSLS" XX SQ Sequence 2073 BP; 630 A; 492 C; 486 G; 465 T; 0 other; atggtcgcgg ttagcaatgt cacaatacaa cgacgacgca atcgtagagc cgcacgaagc 60 gctccacgag ttcagctcat ggctattcca acgaccaccg gcgcaacaca gcgcagaaga 120 agacaacgac gacgaaggag aaataataga ggaggaggca atatttccgg aggatcaggc 180 aaggctcaca cattccagtt ttcgaaggac ggcatcaatg gcagttccaa gggaactatc 240 actttcgggc cgtctttatc agagtgcaag ccactctctg atggaatact caaagcctac 300 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc ttccacctcg 360 tcaggctcca tcgcttatga gcttgaccca cactgcaagt actccgaaat tcaatcgcta 420 ctcaataaat tctcaattac aaagagcggt tcgaaacgat tccccaccaa ggttatcaat 480 ggcctcgaat ggcatgatac cagtgaagac caattcaagg tccactataa ggggaacgga 540 gacgccaaga tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcctaaa 600 taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccccc accagcacca 660 ccacctgaac cgacgccagc caaacatgag agatttattg tgtacaccgg tacactgtca 720 acactcatta gtgcccgaca aaactcagat agcatatccc tctactcaat tagagaccag 780 agggttagat atattgagga tgaaaatgcg aactggacga acatccaagc acaatggtat 840 tcacagaatt ctgtggaggc aataccaatg tttatctacc cagttccgca aggcacatgg 900 tcgattgaaa tctcttgtga aggctatcag gcgacgtcaa gcaccacgga cccccatcgg 960 gggaagtctg atggaatgat tgcttacgac gatgatcaaa agaaggtgtg gaatgttggt 1020 gtgcaaaata atgtaaccat ttccaataac aaagccgacg ctgactggaa atatggtcac 1080 cctaatttaa caattaacgg tgaacgtttt gaccagaatc aggtagtcga gaaagatgga 1140 acaatttcgt ttcatttagt aactaccggg cccaacgcga gtttcttttt agtcggccct 1200 cccgtcaaga agattgccaa gtacaactac tgtatatcat acggggcttg gacagaccgc 1260 gacatggaat ttggaatggt ctctgttgtt ctcgatgaac atttagaggg tgttagaggt 1320 tctcagtacg ttaggaaaac gctaagacca ggtcatatta gcgtcaatcg ttcccaccga 1380 ttgcaagaaa tgcctcccat gcgagaggat ttcagtgagg aagataatag tagtagtgat 1440 agtaatacat ataaaacgga caactctccc ttgactgttc accttgtaaa agcaggtgac 1500 gaggagattt atacaacaga tcgatcggac gatgctgaac ccacacttca tgatgctgat 1560 gtcatgaagt tctccgggtt tgttggagcc aaagataggt ttacgttgca gggcgcagat 1620 ccaatcggcc ctggtgacag atctgtccgt cgcttcagac cgtctgccac attgaagtct 1680 gcgttccatt cgggaccgac tcctgatgag ttgtacaacg ctggtgctga acaagcggat 1740 cacgacttcg aacactttgt ctctcgaggc aaagagaagc tacaggatga agatccaatg 1800 gccaaactcg aaagagaggc tgaggattta aaacctgata gtgacaacga agataacgat 1860 tatgatcgaa ccgctcctgt gttcaaccca gctgatggtg acccctggtc aggcattaaa 1920 ataaagccta gattaaaaga tcaggatatg aggtctacct tgagcactgg caccttgaaa 1980 ggtggttcac tgaaaccgaa gaaagaacca accccaaggt ttgagccagc gccaaagtcc 2040 gttttagata ggattagacg taggcaagtt taa 2073 //