ID EU487025; SV 1; circular; genomic DNA; STD; VRL; 2722 BP. XX AC EU487025; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Tomato leaf curl Cebu virus isolate P2-1, complete genome. XX KW . XX OS Tomato leaf curl Cebu virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2722 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2722 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2722 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; 157d96df096dcb7c6157949920bcd8bb. XX FH Key Location/Qualifiers FH FT source 1..2722 FT /organism="Tomato leaf curl Cebu virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="P2-1" FT /mol_type="genomic DNA" FT /country="Philippines:Nueva Ecija" FT /isolation_source="plant with leaf curling symptom" FT /db_xref="taxon:507474" FT misc_feature join(2578..2722,1..103) FT /note="intergenic region" FT gene 104..448 FT /gene="V2" FT CDS 104..448 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PR54" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PR54" FT /protein_id="ACA60986.1" FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQGKYSPDTVGHEFLKDF FT ICILRSRNYAEAFNRYSDVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVVDLQAH FT VSQAQDVQNV" FT gene 264..1040 FT /gene="V1" FT CDS 264..1040 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PR55" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PR55" FT /protein_id="ACA60987.1" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQFSLPASVPTVPDMSYKRRS FT WTYRPMYRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIVHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGSPQDFGQVFNMYDN FT EPSTATIKNDNRDRFQVLRRFQATVTGGQYASKEQAIVKKFMKINNHVTYNHQEAAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1037..1441) FT /gene="C3" FT CDS complement(1037..1441) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PR56" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PR56" FT /protein_id="ACA60990.1" FT /translation="MDSRTGVLITAAQAENGVYTWMITNPLYFKISQHDERPFLRNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTRLRPQTWRFLRVFNYHCMKYLDSLGVISINN FT VIRAFDYVLYDVLEKTIDVQISHIIKFNIY" FT gene complement(1182..1589) FT /gene="C2" FT CDS complement(1182..1589) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PR57" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PR57" FT /protein_id="ACA60989.1" FT /translation="MQNSSPSHNHCTQVPIKVQHKIAKKRPIRRRRIDLPCGCSYYLGL FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRREAVPEEPRHHNGTNTVQPQ FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI" FT gene complement(1489..2577) FT /gene="C1" FT CDS complement(1489..2577) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PR58" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PR58" FT /protein_id="ACA60988.1" FT /translation="MAPPRKFQINAKNYFLTYPKCSLTKEETLTQLQNLETPTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKYRCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTVEWGEFQVDGRSARGGQQTANDAYAKAINTGSKSEALNVIRELAPKDYILQFH FT NLNANLDRIFAPPLEVFVCPFLPSSFDQVPRELEEWVSENVRDAAARPWRPISIVIEGN FT SRTGKTMWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNRELKNWALKNAEFITITQPL FT YSSSHQSPTQNSQEETDTQAEN" FT gene complement(2130..2420) FT /gene="C4" FT CDS complement(2130..2420) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PR59" FT /protein_id="ACA60991.1" FT /translation="MGALISMCSSSSKGNTDARINDSSIWYPQPDQHISIQTFRELNQA FT PTSNPILIKTETPSNGVSFRSTEDLLEGVNKQPMMLTPKQLTQEVSRRLLM" XX SQ Sequence 2722 BP; 724 A; 524 C; 598 G; 876 T; 0 other; accgtgggac gcgccttttt ttaaccaatc atattggacc ttgacagcta tttaaagtgc 60 atcctgcacc ataaaagagt tttctttata ggtaatggcg aacatgtggg atcctctagt 120 tcatcctttc cctgaaagct tgcacggctt tagatgtatg cttgccatca aatatcttca 180 aagcttacag ggcaaatatt ctccggatac tgttgggcat gagtttttga aagattttat 240 atgtattttg cgtagtagga attatgccga agcgttcaat agatacagtg acgtcgttgc 300 caatgtctat aacacgtcgg aggctcaatt acgggagtca gttcagtctc cctgcctctg 360 tccccactgt cccagacatg tcttacaagc gaaggtcgtg gacttacagg cccatgtatc 420 gcaagcccaa gatgtacaga atgtatagaa gccgtgatgt tcctcgtggg tgtgaaggcc 480 cgtgtaaggt tcagtcctat gagcagcgcc atgatatagt ccatgtgggt aaggtcatat 540 gtgtttctga cgtcactcgt ggtaacgggc ttacacatcg tgttggaaag aggttttgtg 600 taaagtctgt gtatgtgttg gggaaggtct ggatggatga gaacatcaag actaagaatc 660 acactaacac tgtcatgttt tttttagtgc gtgataggag gccatatggg tctccccagg 720 attttggtca ggtttttaac atgtatgata atgagcctag tactgccact ataaaaaatg 780 ataatagaga tcgattccag gttcttcgta gatttcaagc tactgtaacg ggaggtcagt 840 atgcaagcaa ggagcaagca atagttaaga agttcatgaa gattaacaac catgtcactt 900 acaatcatca ggaggctgcg aagtacgata accacacaga aaatgctttg ttgttatata 960 tggcatgtac tcatgctagt aatccagtgt atgctacgtt gaagatcaga atctatttct 1020 atgattctgt tcaaaattaa taaatattga attttattat atgagaaatt tgtacatcga 1080 ttgttttttc aagtacatcg tatagtacat agtcgaatgc cctaattaca ttgtttatgc 1140 taataactcc taaactatct aaatatttca tacaatgata attaaatact cttaagaaac 1200 gccaagtctg aggacgtaaa cgagtccaga ttttgcagat cagaaaacat tgatgtattc 1260 ccaacgcttt cctcaggttg tggttgaact gtatttgtac cgttatgatg tcgtggttcc 1320 tcaggaacgg cctctcgtcg tgttgggata tcttgaaata gaggggattt gttatcatcc 1380 aggtatatac gccattctct gcctgagctg cagtgatgag tacccctgtg cgagaatcca 1440 tatgacgcac aattaagtcc taaatagtaa gagcagccgc acggaagatc aattctccgc 1500 ctgcgtatcg gtctcttctt ggctattttg tgttggactt tgatgggaac ttgagtacaa 1560 tggttgtgtg atggtgatga attctgcatt ttttagtgcc cagtttttga gttccctatt 1620 tttgtcctca tccaagtact ctttatacga tgatgtagga ccaggattgc agaggaagat 1680 agtgggtatt ccacctttaa tttgaattgg tttcccgtac ttcgtgttgc tttgccagtc 1740 tctttgggcc cccatgaact ctttaaaatg ctttagataa tgcggatcaa cgtcatcaat 1800 gacgttatac caagcatcat tgctgtaaac ctttgggctt aggtccagat gtccgcatag 1860 ataattgtgt tggcccagag atctagccca catcgtcttt cctgttctac tattgccctc 1920 tattacaata cttatgggcc tccaaggccg cgcagcggca tccctgacat tctcggaaac 1980 ccattcttca agttctcttg gaacttgatc gaaagaagaa ggaagaaaag gacaaacaaa 2040 aacctctaaa ggaggtgcaa aaattctatc taaattcgca tttaaattgt gaaattgtaa 2100 aatataatct ttaggggcta attctctaat tacattaaga gcctccgact tacttcctgt 2160 gttaattgct ttggcgtaag catcattggc tgtttgttga ccccctctag cagatcttcc 2220 gtcgacctga aactcacccc attcgacggt gtctccgtct ttatcaatat aggatttgac 2280 gtcggagctt gatttagctc cctgaatgtt tggatggaaa tgtgctgatc tggttgggga 2340 taccaaatcg aagaatcgtt gattcgtgca tctgtatttc ccttcgaact ggatgagcac 2400 atggagatga gggctcccat cttcgtgcag ttctctgcag atcttgatga attttttatt 2460 tgttggtgtt tctaggtttt gtaattgggt aagggtttcc tctttagtaa gagagcattt 2520 gggatatgta agaaaataat ttttggcatt tatttggaat tttctgggag gtgccatttg 2580 acttagtcaa tgggtaccaa ttgagaggat ttcattctac tcagggtatc ggtacattgg 2640 tacctatata tacttggtta cctaaagggc attactgtaa attttttcag gtttcacacg 2700 cgtcccacgt atagttaata tt 2722 //