ID EU402389; SV 1; linear; genomic RNA; STD; VRL; 5683 BP. XX AC EU402389; XX DT 13-FEB-2008 (Rel. 94, Created) DT 13-FEB-2008 (Rel. 94, Last updated, Version 1) XX DE Barley yellow dwarf virus-GAV isolate 05WN3, complete genome. XX KW . XX OS Barley yellow dwarf virus GAV OC Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus. XX RN [1] RP 1-5683 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Nucleotide sequence analysis of the genome of Barley yellow dwarf RT virus-GAV in China"; RL Unpublished. XX RN [2] RP 1-5683 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (14-JAN-2008) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100094, China XX DR MD5; a3d5459e4ccfbf51211b995b7a235b42. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5683 FT /organism="Barley yellow dwarf virus GAV" FT /host="wheat" FT /isolate="05WN3" FT /serotype="GAV" FT /mol_type="genomic RNA" FT /country="China:Weinan" FT /db_xref="taxon:224578" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0ZT85" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0ZT85" FT /protein_id="ABY91263.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSSKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQCPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTFEDTPITNHSRM FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0ZT86" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0ZT86" FT /protein_id="ABY91264.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSSKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQCPEARARRERMDVLDSVGF" FT CDS 2856..4832 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0ZT87" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0ZT87" FT /protein_id="ABY91265.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKPDPQP FT TPKPQHKRFFEYVGTPYAIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSN FT NGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGN FT YAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAP FT KTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKTENRDYGWM FT SVLPPYDPNQMPEQEEEQPMVDKEMDPRSPVEPPSPTSDTEAERAFDLREEELTRARLE FT YEAATESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPV FT IAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEY FT TRIRKSMGLTAAKEYKASLADTW" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0LX71" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0LX71" FT /protein_id="ABY91266.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" FT CDS 2893..3357 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q80J48" FT /protein_id="ABY91267.1" FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" FT CDS 4939..5070 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:Q80J47" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q80J47" FT /protein_id="ABY91268.1" FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" XX SQ Sequence 5683 BP; 1714 A; 1379 C; 1349 G; 1241 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca agaacggtcc tctcattgcc tgactagctg agagccatcc 120 ttctatcccc accgccacca tgttctttga aatacttata ggagctagtg ccaaggcggt 180 caaagatttc atcagccact gctactctag actgaaatct atatattatt cttccaaacg 240 atggctgatg gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt tcgccgagag 360 ggaggatgag gtggaagagg ccaggagcct cttgaaactg ctggtcgccc aaaaatctaa 420 atccggggtg accgaggctt ggaacgactt ctttttgaag tcgaggggtg gagtttacgc 480 accgctctct tgtgagccca ccaagcagga actggaagtc aagagcgaga agctcgagag 540 gcttctagac gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaagaaaa 600 gggccgcggc ttcatcaact gctggaacga cttgcgtagc cgtctcagat tggtgaagga 660 tgtcaaggat gaggcgaagg acaacgccaa agccgctgca aagattggag cggaaatgtt 720 cgcccccgtt gacgtgcagg acctctacag ctttacagag gtcaagaagg tggagaccgg 780 cctcacaaag gaggtcgtaa aagaagtgaa cggtgaagaa acaaaacgcc tcgaacccat 840 cttggaagag gtgcgatcca tcaaggacac cgccgaagct agggacgccg cctccacttg 900 gataacagag acagtcaaat tgaaaaattc aacccttaac gctgatgaac tgtctctcgc 960 caccatcgcc cgctacgttg aaaacgtagg ggacaaattc aaactcgaca ttgccagcaa 1020 gacatatcta aagcaatgcg caacgatgtc tgtaccaatt ccaaccacca aggacatcaa 1080 aatgaagatg gtgttgcagt gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttcca 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagtagc 1260 aatattagat accttagcca aacccactta ggtttagtat ataaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtggc agtggagaga agagttttta cagtaggaaa gggggacaaa 1380 cctatttacc ccccccgccc tgagcacgac attttcactg atacaatgga ctactttggt 1440 aagtccataa tcgacgaggt gggatactgc aagacatacc cagcgcaact cctggctaac 1500 agctatagcg caggaaaaag ggccatgtat cacaaagcca ttgcatccct aaaaacaacc 1560 ccctatcagc agagggatgc taatgtgcaa gctttcctca agaaggaaaa acattggatg 1620 accaaggaca tcgctccccg attgatatgc ccccgcagca agcggtacaa cattatccta 1680 ggaactcgtt tgaaattcaa cgagaagaag atcatgcacg ccatcgatag tgtgtttgga 1740 tcccccactg tgctttctgg ttatgataac ttcaagcaag gaagaattat agccaagaag 1800 tggcaaaagt ttgcatgccc cgtcgctatc ggcgtggatg ctagccgctt tgaccaacac 1860 gtgtcagagc aggcgcttaa gtgggaacac gggatataca atggaatctt cggtgatagc 1920 gaattggctc ttgcacttga acaccaaata tccaacaaca tcaaaatgtt cgtagaggat 1980 aaaatgctta ggttcaaggt tagaggccat agaatgtccg gtgacattaa taccagcatg 2040 ggaaacaagc taataatgtg cggcatgatg cacgcatatt tcaagaagct gggtgttgaa 2100 gcagaactat gtaacaatgg agacgactgt gtcatcatca cggacagagc caatgagaag 2160 ctctttgatg gcatgtacga tcactttctc cagtatggtt tcaacatggt gaccgaaaaa 2220 ccagtttacg aactggaaca attggagttt tgccagtcaa aaccggtctc tattaatgga 2280 aaatacagaa tggtcagaag gcccgatagc ataggcaaag acagcacaac actactgagc 2340 atgctcaacc aatccgacgt caaaagttac atgtcggctg tggctcagtg tggtttggtg 2400 cttaacgctg gagtacccat actcgaaagc ttctataaat gcctatatag aagctctggg 2460 tacaagaaag tgagtgaaga attcatcaaa aacgtcattt cgtatggaac agatgagaga 2520 ctacaaggta gacgtacctt tgaagacaca cctatcacta atcatagtag gatgtcctac 2580 tgggaatcat tcggagttga ccctaagata caacaaattg tcgagcggta ctacgacaat 2640 cttacggtga gtgcccaact ccagagcgtg aaggtgacta ctccacatct gcaatcaata 2700 ctactttcca taccggaaaa ccactcacaa aacgactatt aattaccaaa tcttagctgg 2760 gtttggaata gggtttatag tttctattcc ctgtacatta gctctctcct acttcatcta 2820 caataaagtt tctgacacca ctagggaggt ggggaatgaa ttcagtaggc cgtagaaata 2880 accgcaggag aaatggccca aggagagcaa ggcgcgctgg cgcagttcgg agaatggttg 2940 tggtccaacc caatcgagcc ggaccaaaac gaagaactcg tcgacgcaca agaggaggag 3000 gggcaaatct tatatctgga ccagcaggca ggactgaggt attcgtattc tcagtcaacg 3060 accttaaggc caactcctca gggacaatca agttcggtcc cgacctttcg caatgcccag 3120 cgctttcagg tggaatactc aagtcctacc accgttacaa gatcacaaac gtcaaggttg 3180 agtttaagtc acacgcgtcc gcctctacag tcggcgcaat gtttattgaa ctcgacactt 3240 cgtgctcaca atcaaccttg ggtagctaca ttaactcatt caccctctca aaatcagcaa 3300 ccaaaaactt caccgcccaa cagattgacg ggaaggaatt cagggagagc acggtgaatc 3360 aattttatat gctatacaag gcaaacggta gtacatctga taccgccggg caatttatca 3420 ttacaatacg cgttgccaac atgactccca aataggtaga ctcctcaaca ccagagccta 3480 caccccaacc ccaaccagag cccaaacctg atccgcagcc aacaccaaag cctcaacaca 3540 aacggttttt cgagtacgta ggaacgccct atgctatcat acaaactagg gagagttcgg 3600 atagcattgc cgtcaagtca atgaatgatc aatcctttca gtacatcgaa aacgaaactt 3660 ctgagcaaag aaccgttcag gcatggtgga cctccaacaa cggcgtccaa gcgcaagcag 3720 catttgtatt tcctatacct gctggagagt atagtgttaa tatttcttgc gaaggtctac 3780 aatcagtgga ccacattgga ggaaaccgag acggatattg gataggctta atagcctacc 3840 aaaaccaaag cggggattat tggggcgtgg gcaactatgc tggctgtgat ataaccaatc 3900 ttctaggaac aaacacttgg cgtccaggcc atgaagattt ggaattaaac ggctgcaaat 3960 tcactaatgg acagatagtt gaaagagacg ctgtgatatc cttccatgtt aaagctcagg 4020 gtgctgaccc caagttttac ctcatggcac ccaagaccat gaagtctgac aagtacaact 4080 atgttgtctc gtatggaggt tacacagaca aaagaatgga atttggatcc atatctgtca 4140 ctgtggatga atccgatgtt gaggcacagc gctacaacag gcatactagc acggttagga 4200 aaacagaaaa ccgagattat gggtggatga gtgttctacc accctatgat cctaaccaaa 4260 tgccggagca agaggaagag caaccaatgg tcgataagga gatggatcca agatctcctg 4320 tcgaaccccc ttccccaacc tccgacactg aggctgaaag agcctttgac ttgagagagg 4380 aagaacttac gagggctaga cttgaatacg aggcagccac tgaatccata cctgatgctg 4440 ccccggacat tttaccctca aaatctgaaa tgagcagtag accaatagac catgatggaa 4500 ggtctttacc aaaacctcag tcaaaagaag tcctcggcac ttaccaaggc cagaacatca 4560 caccagatga tgttcctcct gtcatagctg aaaaattgcg tgaagtgaac agagcaccat 4620 ctactctgct ttacgacagg cagccaaaaa caccaaaaag ctttctttcc cgtttcgtag 4680 aaaccaataa aactagcttg gcttcccctg gttcacagtc ttccacgtca ggaatgacaa 4740 gagaacaagc ctcagaatac accaggatta ggaagtcaat gggcctcacg gcagctaagg 4800 agtacaaagc cagtttagct gacacatggt gaagatcaac accactcgca aattcggatc 4860 ctgggaaaca ggcagaactt cggttcgtaa gctcgggtaa actagtcctt taccgtcgta 4920 tcgtactttg tgtggccgat ggatgatcta catgtgatag cagtctgtgt gctgtccacg 4980 acagtgttcg cagcggcagt actcacaatt agcgcaattg ctagtatttg cggcagtgca 5040 tgtgcaactg ccaacattca aagggtttaa tctgtgatac aacccaccaa aaatacacgg 5100 ggaacaacag gttcagcgag ggggctaacg acccccagca attggctggt tctgggagac 5160 ttaaataacc tcctatagaa cgaagtggaa tccccccact gatcaaattg ggaagcatgc 5220 ttctgtgcta tacactgccc cagaggacac tgggtaaaca aatctaacca cccaactcaa 5280 tgaaatgaga gcggaggtgg cggggtgggt gacctcgtga tgtgcacccg atcgtcagga 5340 ttgaagacgt taaaactcaa cgacctagtg caagtcgtta aactgactcg ggtggataca 5400 ccacacccgg cccaacttgg aggcataccc acgatacgaa acgtgggttt cttggagcca 5460 ctacctgtga tgcaaggtag ggtatgggtc ttagcaagcc ctgcgccagg aaatggacat 5520 aaaccatagc aatcccccaa gtcctctcgg caagccacag gtgaaacgtg ccacaggcct 5580 gactaccgaa aggaaaatca gtatccaaca cagcaatgtg ttgggggtca cacccttcgg 5640 ggtactctta acgctgacac tcgaaagagc agttcggcaa ccc 5683 //