ID EU332307; SV 1; linear; genomic RNA; STD; VRL; 5657 BP. XX AC EU332307; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06ZZ10 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5657 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5657 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5657 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 3eb63992fd003cf4b89330cebc1586c0. DR EuropePMC; PMC3033904; 21326861. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5657 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06ZZ10" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKK0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK0" FT /protein_id="ABY73541.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKAIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLKLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGVFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFGGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMCNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKK1" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK1" FT /protein_id="ABY73542.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKAIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLKLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4795 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKK2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKK2" FT /protein_id="ABY73546.1" FT /translation="MNSVGRRGPRRVNNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPTPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPTGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIVSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL FT IDEGYHQTLPPIQNLGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAKIPDAEE FT DVLPSKEQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDAAKA FT PSTLLYDKAPKSKSFLSRFVEGNRSKTETTAPSTATTSNLTREQLREYTRIRNSLGLTA FT AKEYKAQFL" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKK3" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKK3" FT /protein_id="ABY73543.1" FT /translation="MNSVGRRGPRRVNNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKK4" FT /protein_id="ABY73544.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAREEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLGHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANQPLSPSAQRRLEGPSSRRHR" FT CDS 4925..5047 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:B0FKK5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKK5" FT /protein_id="ABY73545.1" FT /translation="MDDLHVIALCVLSSTILAGTALVIGCCVGCCRLIDAAYSV" XX SQ Sequence 5657 BP; 1608 A; 1374 C; 1357 G; 1318 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca acagagtcct acagttgcct gacaagcctg tagccccctt 120 cttccccttt cactcgccat tatggtgttc tttgagatgc tcatcggtgc cagcgtgaag 180 gctgtcaaag acttcatcag ccactgctat tccagactca agagtatata ctactctttc 240 aagagatggc tgcttgagat atccgggcaa ttcaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga catcgaggac ttcgaggcgg agctcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttactaac tgcccagaag 420 tctaaatctg gggtggacga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccaaaagcc atagagcttg atgctaaagc ggacaagttg 540 gaaaagctcc ttgaggacat gcacctgttc gaggtgcgcg cggccaagac ctacatcaag 600 gaaaagggcc gtggattcat caactgctgg aatgaccttc gatcaaggtt gaagttggtg 660 aagtctgtca aagacgaggc caaggacaac attaaagcgg cctccaagat tggtgtggag 720 ttctctgctc caaccaatat tgctgatctc tacacattca ctgaggttac aaaggtagag 780 acaggtctta ccaaggagac aactagggtt gtcaacgggg aggaggagac ctccaccgta 840 cccctggttg aggacgtccg gaaaattaag gacgacgaag ttagcaggga gagtgcctcc 900 aattggatca gggaggtaat caaattgaaa aattccaccc tttctgctga cgagctttcc 960 ctggcgacca tcgccaggta tgtggaaaat ttaggggaaa aatacaaact tgacattgca 1020 tccaaaacat atctcaagca atgtgcaatg atttcggtac caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg cacttcgtga gcgcgtggca 1140 gttcttgact cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccagaccc atctaggcct tgtatataaa gcacccaatg 1320 catccctgca caacgcgctt gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ctaccccccc caccctgaat atgacatttt ctcagaaaca atgggctact 1440 ttgcagagtc cattgtcaac aaggtgggat actgcaaaac atacacccct cagcaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaaccata ccaaatgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctga tttgcccccg ctccaagcgg tacaatatca 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgccatt gacggtgtgt 1740 ttggatcccc cactgtgctt tcaggctatg atagctttac ccaaggcaga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctatcggtgt tgatgctagc cgctttgacc 1860 aacatgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agcttgtaaa taatattaag atgttcgttg 1980 aggataagat gctaaccttc aaagttaggg gccatagaat gtcaggggac attaacacca 2040 gcatgggaaa caagctcatc atgtgcggca tgatgcacgc ttactttaag aagctgggtg 2100 ttgaggcgga actttgtaac aatggagatg attgtgtcat cataactgaa agggctaatg 2160 aacacctttt cggtggaatg tatgaccatt tccttaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttacgaactc ggggaacttg aattttgcca atctaaaccc gtcagaattg 2280 gtggcaacta tagaatggtc cgcaggcccg actgcatagg gaaagatagt aacacacttt 2340 tgagcatgtg caatgaatcc gacgtcaaaa gctatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggcgta cccatactcg aaagcttcta ccgctgtctg tacagaagct 2460 cggggtacaa gaaagtaagt gaggaataca tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgtatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tattactagt attccctgta cattagctct cgcatacttt 2820 atttacaata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagtaaaca atggcacaag aaggcggcgc cgtagagcaa ttcggccagt 2940 ggttgtggtc caacccaatc gaacaggacc cagacgacga aatgctagac gcgcgagagg 3000 aagaaggcca aattctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatc tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt aggacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 agcctctaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaaccagttc tttcttttgt acaaggcaaa tggcacgacg accgatattg cggggcagtt 3420 tatcattaaa attgagcttc acttaatgac tgccaaatag gtagactcct caacaccgga 3480 acccaaaccc acaccaactc caacaccccc ccctcaacct gagcccaaac cagagcccac 3540 acctgcacct ccccctaaac gcttctttga gtatgttggc accccgaccg gagttatatc 3600 aactcgggaa aacactgata gcatatcagt gtcgaagctt gggggtcagt caatgcagta 3660 catagagaac gagaagtgtg agacaaaaac catcgtctct ttctggagca caaacaacaa 3720 cgtttcggcg caagccgctt tcgtttttcc agtgccggaa ggatcgtaca gtgtgaacat 3780 ctcgtgtgaa ggtttgcaat ccgttgacca cattggtggc aacgaagatg gctattggat 3840 tgggctcata gcttactcca attcatcagg tgataattgg ggagtgggca actacaaagg 3900 gtgtgtgttt acaaatttct tggcaacgaa tacctggcga ccaggtcaca aggatttaaa 3960 acttaacgat tgccaattca cagacggaca gatagttgaa agggatgcag ttatgtcttt 4020 ccacgtgcaa gcatcaggca aggacgcctg tttctatata atggctccca aaacaatgaa 4080 aactgacaaa tacaactatg ttgtctcgta tggagggtac acgaacaaaa ggatggagtt 4140 cggtactatc tccgttacgt gtgatgaatc cgatgttgag gcactccgta tgtccaggca 4200 ctccgagagt cccacccgcg taaataacat tttaatagat gaaggatacc atcaaacttt 4260 acctcccata caaaatttag gactgtgtga tgtgcaaact cccggtcaag atgaggtaga 4320 ggaggatgat aaacaaactg tttctactga acctgatata gcgctgcagg aatacgaggc 4380 cgcaacagct aagattccag acgctgaaga ggatgtcttg ccctctaagg aacagctttc 4440 atctaaacct gtggacacat ccggcgagga aattccaaaa ccccccccga gggacaatga 4500 aatccttgga gtttaccaag gtcaacctat atacgctgat gatgtgccac ccattgccag 4560 gcagaaactt cgagacgccg ccaaggcacc ttccaccctg ctatacgaca aggcaccaaa 4620 atccaagtcg tttttatccc gttttgtgga agggaacagg tccaagacag aaaccactgc 4680 tccatcaacc gcaacgacat ctaacttgac cagggagcag ctccgtgaat atactagaat 4740 tagaaatagc ttaggcctca ccgccgcaaa ggagtacaag gcacaatttt tgtgaagaca 4800 aacaccactc gcgcaaatcg gatcctggga aacaggctga acttaggttc gtaagctcgg 4860 gtgattggag ggtgggctgt caacccacca ccaactcacc gccgtatcgt attgcgtgtg 4920 gccgatggat gatcttcacg ttatcgccct ctgtgtcctt tcctcaacca tcctggctgg 4980 tacagcgcta gtgattggtt gttgcgtcgg ttgttgcagg ttaatagacg cggcttattc 5040 tgtgtaagtt gcgaccaaaa atatcgagga agcttcggct tagtgagagg attaacgacc 5100 ctcagcaaag gctggtcttg gcaagcctga atagcttgct ataagacaac tggaaaccca 5160 ccagtgatca aataaggtag cttgcttctg agctatacac tgcccccgcg caatcggggt 5220 aaacaactat aactgcccaa ctcgatgaaa cgagagtgga ggtggcggag tgggtgactt 5280 cgtgatgtgc acccgaacgt caggtttgaa gacgttataa aacacagcga gatgagaacc 5340 tcgttaaaag ttcctcggct gatacaccca gtcgaccgga cctgttggca tacccttgat 5400 acgaaacaag ggcttctgag agccactacc tgtgatgcaa ggtagggtaa gagtcttagc 5460 aacctctgta ctcggaagtg gacataaacc atagcaatcc aacagcatcc cggaagagag 5520 ttttcctcac caggtggaac gtgccacggg cctgtttcaa gcaatctagc tctgcttgac 5580 acagtatccc atagaagcaa ttctatgggg ggactggatt ctgactgccg acactcgcaa 5640 gagaagttcg gcatccc 5657 //