ID   EF620536; SV 1; circular; genomic DNA; STD; VRL; 2761 BP.
XX
AC   EF620536;
XX
DT   01-JAN-2008 (Rel. 94, Created)
DT   01-JAN-2008 (Rel. 94, Last updated, Version 1)
XX
DE   Tobacco leaf curl Japan virus, complete genome.
XX
KW   .
XX
OS   Tobacco leaf curl Japan virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2761
RA   Ali A., Okuda S., Natsuaki T.;
RT   "Identification of Tobacco leaf curl virus infecting Lonicera japonica, an
RT   ornamental plant common in Japan";
RL   Unpublished.
XX
RN   [2]
RP   1-2761
RA   Ali A., Natsuaki T.;
RT   ;
RL   Submitted (19-MAY-2007) to the INSDC.
RL   Plant Pathology, NWFP Agricultural University, University Road, Peshawar,
RL   NWFP 25000, Pakistan
XX
DR   MD5; 4f0c05c77d9100f1b6a5ead8f7318b0d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2761
FT                   /organism="Tobacco leaf curl Japan virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Japan"
FT                   /db_xref="taxon:223332"
FT   CDS             147..497
FT                   /codon_start=1
FT                   /product="AV2"
FT                   /db_xref="GOA:A9XRA3"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:A9XRA3"
FT                   /protein_id="ABU95070.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAVKYLLAVEATYSPDTIGYDLIRDL
FT                   IGVIRAKNYVEASCRYRDFHSRLQGTAPSELRQPVCQPCECPHCPRHKPKESMGPKAHL
FT                   SEAQDVQNVQKP"
FT   CDS             307..1080
FT                   /codon_start=1
FT                   /product="AV1"
FT                   /note="coat protein"
FT                   /db_xref="GOA:A9XRA4"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:A9XRA4"
FT                   /protein_id="ABU95071.1"
FT                   /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYANRVSAPIALATNRRRAW
FT                   AQRPIYRKPRMYRMYRSPDVPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDITRGNGLTH
FT                   RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMFENE
FT                   PSTATVKQELRDRLQVLHRFSATVTGGQYASKEQAIIKRFWKLNHHVTYNHQEQAKYEN
FT                   HTENALLLYMAATHASNPVYATLKIRVYFYDSVQN"
FT   CDS             complement(1077..1481)
FT                   /codon_start=1
FT                   /product="AC3"
FT                   /db_xref="GOA:A9XRA5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:A9XRA5"
FT                   /protein_id="ABU95072.1"
FT                   /translation="MDSRTGDTITAAQAWNGAYIWTVPNPLYFKITNHAQRPFNMHQDI
FT                   ITIQIQFNHNLRSQLDLHKCFLTFKIWTHLQPLTSYFLNTFRTNVIDYLDNLGVISINN
FT                   VIRAVDHVLYDVLGGTEYVQQFIDIKFKLY"
FT   CDS             complement(1222..1629)
FT                   /codon_start=1
FT                   /product="AC2"
FT                   /db_xref="GOA:A9XRA6"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:A9XRA6"
FT                   /protein_id="ABU95073.1"
FT                   /translation="MRPSSPSTAHSTQVPIKVQHRIGKTRAPRRRRIDLNCGCSIYVAL
FT                   DCANHGFTHRGHHHCSSGMEWRVYLDSTKSPIFQNHEPRSTAIQHASGHNNDTDTVQPQ
FT                   PQVSTGSTQVLPDLQDLDSLTTSDLLFLEYI"
FT   CDS             complement(1529..2617)
FT                   /codon_start=1
FT                   /product="AC1"
FT                   /note="replication associated protein"
FT                   /db_xref="GOA:A9XRA7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:A9XRA7"
FT                   /protein_id="ABU95074.1"
FT                   /translation="MAPPNRFRINSKNYFLTYPHCSLTKEEALSQIQSLQTPTNKLFIR
FT                   ICRELHEDGSPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQAAKSSSDVKTYM
FT                   EKDGDVADFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDFVLQFH
FT                   NLNSNLDRIFTPPLEVFVSPFLSSSFDRVPEELEEWAAENVRDRRAPWRPMSIVIEGDS
FT                   RTGKTMWARSLSPHHNYLCGHLDLSPKVYNNSAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNATFITLYGPL
FT                   YSGSHQGSAQNREDESTSQTED"
FT   CDS             complement(2167..2460)
FT                   /codon_start=1
FT                   /product="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:A9XRA8"
FT                   /protein_id="ABU95075.1"
FT                   /translation="MGALISTSSSSSRENTNAQINDSSTSSPQLGQHISIRTFRRLRAR
FT                   QMLRPTWRKTETSLILECSRSMEDQLEEVASLPTTHMPRQSTQDLSHRHSIY"
XX
SQ   Sequence 2761 BP; 732 A; 551 C; 642 G; 836 T; 0 other;
     tataatatta ccggatggcc gcccgaaatt tcgtggtggg ccccccattg tcggccaatg        60
     atattcgttc ctcatacgct agataagtgg atagtgacgt atgcttttgt ctttatatac       120
     gtcagcccta attttaaact ttaaccatgt gggatccttt acttaatgaa tttcctgaaa       180
     ccgttcacgg ttttaggtgt atgcttgcgg ttaagtacct gttagcggta gaagctacat       240
     actctccgga tacgataggt tatgatttga ttcgtgatct tataggtgtg attcgtgcca       300
     agaactatgt cgaagcgtcc tgcagatata gggattttca ctcccgtctc caaggtacgg       360
     cgccgtctga acttcgacag cccgtatgcc aaccgtgtga gtgcccccat tgccctcgcc       420
     acaaaccgaa ggagagcatg ggcccaaagg cccatttatc ggaagcccag gatgtacaga       480
     atgtacagaa gccctgatgt gcctaagggg tgtgaaggcc cgtgtaaggt ccagtcattc       540
     gagaagaaaa atgatgttgg tcattctggt actctgctct gtgtatctga tattacccgt       600
     ggtaatgggc ttactcatcg tgttgggaag agattttgta taaaatcagt ttatataatt       660
     ggtaaaatat ggatggatga aaatattaag accaagaatc acactaacaa cgtgttattc       720
     tggttggtta gagatagacg acccggttca accccttatg gatttcagga ggcattcaat       780
     atgtttgaga atgaacccag cacggcgact gttaagcaag aattaagaga tcgtttgcag       840
     gttttacaca gatttagtgc gactgttact ggtggacaat atgcgtctaa ggagcaagcg       900
     atcataaaac ggttttggaa gttgaatcat catgtcactt acaatcatca agagcaggct       960
     aaatatgaga atcatactga aaatgcttta ttattgtata tggctgctac tcatgccagt      1020
     aatcctgtgt atgctacttt aaagatcaga gtgtatttct acgattcagt acaaaattaa      1080
     taaagtttga attttatatc aatgaattgc tgtacatatt ccgttcctcc caatacatcg      1140
     tacaatacat gatcaactgc cctaattaca ttgtttattg aaattacacc caaattatct      1200
     aaatagtcta ttacatttgt cctaaatgta ttcaagaaat aggaggtcag aggttgtaag      1260
     tgagtccaga tcttgaaggt caggaagcac ttgtgtagat ccagttgaga cctgaggttg      1320
     tggttgaact gtatctgtat cgttattatg tcctgatgca tgttgaatgg ccgttgagcg      1380
     tggttcgtga ttttgaaata taggggattt ggtactgtcc agatatacgc gccattccat      1440
     gcctgagctg cagtgatggt gtcccctgtg cgtgaatcca tggtttgcac aatccagagc      1500
     gacgtaaata gaacaaccgc agtttaggtc aatcctccgt ctgcgaggtg ctctcgtctt      1560
     ccctattctg tgctgaacct tgatgggaac ctgagtagag tgggccgtag agggtgatga      1620
     aggtcgcatt tttaattgcc catgccttta gtgcggcgtt cttgtcctca tctaaatact      1680
     cggtgtatga tgacgttggt cctggattgc agaggaagat tgttgggata ccacctttaa      1740
     tttgaattgg tttcccgtac ttagtgttgc tttgccagtc tctttgggcc cccatgaatt      1800
     ctttaaagtg ctttaggtag tggggatcca cgtcatcaat cacgttgtac caggcgctgt      1860
     tattgtaaac cttggggctt aagtcaagat ggccgcaaag atagttatga tgtgggctca      1920
     acgacctggc ccacatggtc ttccctgtcc tgctatcccc ctcaatcaca atactcatgg      1980
     gcctccacgg cgcgcgacga tccctgacgt tttctgccgc ccattcttcg agttcttccg      2040
     gaactcgatc aaaggaagaa gataaaaaag gagaaacaaa aacctccaac ggaggagtaa      2100
     aaatcctatc taaattactg tttaaattat gaaattgtaa aacaaaatct ttgggagctt      2160
     tctcccttaa tatattgagt gccgatgact tagatcctga gttgattgcc tcggcatatg      2220
     cgtcgttggc agactggcaa cctcctctag ctgatcttcc atcgatctgg aacactccaa      2280
     aatcagcgac gtctccgtct ttctccatgt aggtcttaac atctgacgag ctcttagccg      2340
     cctgaatgtt cggatggaaa tgtgctgacc tagttgggga gacgaggtcg aagaatcgtt      2400
     gatttgtgca ttggtatttt ccctcgaact ggatgaggac gtggagatga gggctcccat      2460
     cttcatgtag ttcacgacag atccggatga ataatttatt tgttggtgtt tgtagggatt      2520
     gaatttggga aagtgcttct tctttggtga gagagcagtg tggatatgtg agaaaataat      2580
     ttttgctatt tattcgaaaa cgatttggtg gtgccatatt tacaaatatg cccttgtaca      2640
     ccgattggga gagaaaaact ctttgctatg aatcggtgta ttggtgtaca atatatactc      2700
     ctctatcttt tgaaaagtga aattcaaaat tcaaaattca aattggtaaa gcggccatcc      2760
     g                                                                      2761
//