ID EF521841; SV 1; linear; genomic RNA; STD; VRL; 5673 BP. XX AC EF521841; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate 052, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5673 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5673 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; 865f67b1f41d799058fa4f69e1126c8d. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5673 FT /organism="Barley yellow dwarf virus PAV" FT /isolate="052" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="Sweden" FT /db_xref="taxon:2169986" FT primer_bind 1..19 FT /note="derived from viral specific primer used for RT-PCR" FT CDS join(142..1158,1158..2744) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A2X8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2X8" FT /protein_id="ABP68755.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEELFSGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSISGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYSETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 142..1161 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A2X9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2X9" FT /protein_id="ABP68756.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2858..4810 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A2Y0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2Y0" FT /protein_id="ABP68757.1" FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETR FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR FT SKHILVSERYVEPLPTIIDQGLCDVKTPEQEQTLVDEEDRQTVSTEPDIALQEYEAATA FT EIPDAEEDVLPSREQLSSKPLDTSGNIIPKPKEPEVLGTYQGQNIYPEDVPPLARQRLR FT EAAKAPSTLLYERTPKKSSNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U5" FT /protein_id="ABP68758.1" FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A5A2Y2" FT /protein_id="ABP68759.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL FT RPALSLLNSTPRASNQPWVATLIPSPSARPPPRSSGQRQLTGRNSRNQR" FT CDS 4917..5045 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:A5A2Y3" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A2Y3" FT /protein_id="ABP68760.1" FT /translation="MEDLHVIAACMLALTVLTGLGAVVGCCVGCFRSPFPSPRPSL" FT primer_bind complement(5650..5673) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5673 BP; 1662 A; 1356 C; 1392 G; 1263 T; 0 other; agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cacacccgtt 60 tcgtgttcgg gaagtagttg cgaaaacggt ccccttattg cctgacaagc taagggccac 120 ccttctaacc ccaccgccac catgtttttc gaaatactaa taggagctag cgctaaggcg 180 gttaaagact ttattagcca ttgttactct agattaaaat ctatatattt ttcatttaaa 240 cgatggctaa tggagatatc tgggcaattt aaggcccatg acgcctttgt caacatgtgc 300 tttgggcaca tggctgacat tgaggacttc gaggcggaac tcgctgagga gttcgccgag 360 agggaagatg aggtggaaga ggcgaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaaactgggg tgaccgaggc ttggaccgac ttctttacga agtcgagagg tggcgtttat 480 gcgccacttt cctgcgagcc taccaggcag gaactagaag tcaagagcga gaagctcgaa 540 aaacttctag aagaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaggaa 600 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gacgtcaagg acgaggcgaa ggacaatgcc agagctgctg ccaagattgg agcagaaatg 720 ttcgcccccg ttgacgtgca ggacctctac agctttacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaggagaaa aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgaggtc tatcaaggac accgccgaag ccagggacgc cgcctccacc 900 tggataacag agacagttaa gctgaagaac tcaacgctta acgcagatga actgtctctt 960 gccaccatcg cccgctatgt tgaaaacgta ggggacaaat tcaaactcga cattgcaagc 1020 aaaacatatc taaagcaagt cgcatcgatg tctgtaccaa ttccaactaa caaggacatc 1080 aaattaaaga tggtgctaca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccatttc 1200 ccatactcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag ataccttagc caaacccact taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa cgcgcttgtg gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aagcaatcta ccccccccgc cctgagcacg acattttcac tgatacgatg gattacttcc 1440 agaaatccat tatagaagag gtgggatact gtaagacata tccagcgcaa ctcctggcta 1500 atagctatag cgcaggaaag agggctatgt atcacaaagc cattgcatcc ttgaagactg 1560 tcccttatca tcagaaggat gccaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtac aatattatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgccatcgat agtgtgtttg 1740 gatcccccac tgtgctttct ggttatgaca acttcaaaca aggaaggatc atagccaaga 1800 agtggcaaaa gtttgcatgc cccgtcgcca ttggcgtgga tgctagccgc tttgaccaac 1860 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc tcttgcactt gaacaccaaa tcaccaacaa tatcaagatg tttgttgaag 1980 acaaaatgct taggtttaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaacaa gctgataatg tgcggcatga tgcacgcata tttcaagaag ctgggtgttg 2100 aagctgagct atgcaataat ggagatgatt gtgtcatcat aactgataga gcgaatgaag 2160 aactcttcag tggaatgtat gaccatttcc tacaatacgg cttcaacatg gtgaccgaga 2220 agccagttta cgaactggaa caactggagt tttgccagtc aaaaccggtc tctattagtg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct atatgtcggc tgtggctcag tgtggtttag 2400 tgctaaacgc tggggtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaattcatca aaaacgtcat ttcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tattcggaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagtg tgaaggtgac gactccacat ctgcaatcaa 2700 tactgctttc cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct 2760 gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcccaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 tgacaacctt aaagccaact cctccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tactcaagtc ctaccatcgt tacaagatca caagtatccg 3180 agttgagttt aagtcacacg cgtccgccac tacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aagcaatcag ccctgggtag ctacattaat tccttcacca tcagcaagac 3300 cgcctccaag gtcttccggt cagaggcaat taacgggaag gaattccagg aatcaacgat 3360 agaccaattt tggatgctct acaaggccaa tggaacaacc actgacacgg caggacaatt 3420 cattatcacg atgagtgtca gtttaatgac ggccaaatag gtagactcct caacaccgga 3480 accgaaacct gcaccagaac caacaccaac cccacagcct acgccagcac cacagcccgc 3540 acctgagcct actcctgcac ctgtccccaa acgattcttt gagtatatcg gaactccaac 3600 cggtacaatc tcaactagag agaattctga cagcatttct gtcagtaagc tcggaggaca 3660 gtcaatgcag tacattgaga atgagaaatg tgagacaaga gttatagatt ccttctggag 3720 cactaacaac aacgtgtctg ctcaagcagc cttcgtttat ccagtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg aaggctttca atccgttgac cacattggtg gtaacgaaga 3840 tggctactgg attggtctaa ttgcttactc caattcgtct ggcgacaact ggggtgtagg 3900 taattacaaa ggatgcagtt tcaaaaactt cttggcaacc aacacttgga gaccaggcca 3960 caaagatctc aagttgaatg attgccagtt cacagacgga caaatagttg aaagggatgc 4020 cgtgatgtct tttcacgtag aggccacagg tactgatgcc tgtttctacc taatggctcc 4080 caaaactatg aaaactgaca aatacaacta tgttgtctct tatggagggt acacaaacaa 4140 acgaatggaa tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg 4200 cataactagg catgctgaaa cacccatccg ttctaagcac attcttgtgt ccgagcggta 4260 tgtggaacca ttgcccacca taatcgatca aggcttgtgt gatgtgaaaa ctcccgagca 4320 agaacaaaca ttggtggatg aagaagacag gcaaactgtt tcgactgaac ctgatatagc 4380 actccaggaa tatgaagctg ccacagctga aatccctgat gctgaagagg atgttttgcc 4440 ctctagggaa caactgtctt ctaagccatt ggacacgtct ggcaatataa tacctaaacc 4500 caaggaacct gaagtacttg gaacatacca gggtcagaat atttaccctg aagacgtgcc 4560 accgctagcg cggcagaggt tacgcgaagc cgcaaaagca ccctccacgt tgctctatga 4620 aagaacgcca aagaagagca gcaacttctt gactcgtttt gtggaggcga ataggtcccc 4680 tactactccc gctgctccta cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc 4740 ggagtacact agaattagga aatcccttgg gctcacggca gcaaaggaat acaaagcgca 4800 atttcagtga agataacacc actagcacaa ctcggatcct gggaaacagg cagaacctcg 4860 gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc gttttgtgtt tggccgatgg 4920 aagatctcca cgttatcgcc gcttgtatgc ttgctctgac cgtgttgaca gggttaggcg 4980 ctgtagtcgg ctgctgtgtc ggctgctttc gatccccctt cccttcccct cgcccttcct 5040 tgtaagcaaa agtttcttgg tctgtgcaag gaacaatcaa aaatatcagg gagctttggc 5100 tcagtgaggg gattaatgac ccccagtaat ggctggtctt ggcggacatg aataacccgc 5160 tataggacaa agtggtaacc gccactgatc aaatggtgaa catgcttctg tgttgtacac 5220 tgccccggag cccaccgggt caacaaggtt attccaccaa ctcgatgaaa tgagagtgga 5280 gtgggcggag tgggtgactt cgtgatgtac acccgatcgt caggattgaa gacgttaaaa 5340 ctcgacgacc tagtgcaagt cgttaaactg actcgggtgg atacaccaca cccggcccag 5400 catgttggca tacccacgat acgaaacgtg ggtctcttgg agccactacc tgtgatgcaa 5460 ggtagggtat gagtcttagc aagctctgtg ccaggagatg gacataaacc atagcaatcc 5520 aacatgtttc cgcactgggg caaaccacag gtgaaccgtg ccacgggcct ggttaccgaa 5580 aggaaagcca gtatccaaca cagcaatgtg ttgggggtta cacccttcgg ggtactctta 5640 acgctgacac tcgaaagagc agttcggcaa ccc 5673 //