ID   EF408184; SV 1; linear; genomic RNA; STD; VRL; 786 BP.
XX
AC   EF408184;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-MAV isolate MAV LMB2a RNA-dependent RNA
DE   polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE   movement protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus MAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-786
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-786
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
DR   MD5; 77d4ef9817e043d979b698eb041778b6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..786
FT                   /organism="Barley yellow dwarf virus MAV"
FT                   /host="Festuca novae-zelandiae"
FT                   /isolate="MAV LMB2a"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Otago"
FT                   /note="serogroup: MAV"
FT                   /db_xref="taxon:2169984"
FT   CDS             <1..80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /db_xref="GOA:B6RCJ0"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCJ0"
FT                   /protein_id="ABR26543.1"
FT                   /translation="SVKVTTPHLRSILLSIPENHSHNEY"
FT   CDS             194..>786
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /db_xref="GOA:B6RCJ1"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCJ1"
FT                   /protein_id="ABR26544.1"
FT                   /translation="MSLVGRRNNRRRNGPRRARRVSAVRRMVVVQPNRAGPKRRTRRRT
FT                   RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT                   NVKVEFKSHASANTVGAMFVELDTSCSQSTLGSYINSFTISKSATKTFTAQQIDGKEFR
FT                   ESTVNQFYMLYKANGTTSDTAGQFIITIRVANMTP"
FT   CDS             231..695
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCI3"
FT                   /protein_id="ABR26545.1"
FT                   /translation="MAQGEQGALAQFGEWLWSNPIEPDPNDELVDAQEEEGQILYLDQQ
FT                   AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP
FT                   IQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKPSPPNRLTGRNSGRAR"
XX
SQ   Sequence 786 BP; 237 A; 197 C; 173 G; 179 T; 0 other;
     agagtgtgaa ggtgactact ccacatctgc gatcaatact actttccata ccggaaaacc        60
     actcacataa cgaatattaa ttatcaaatc ttagctgggt ttggaatagg gtttatagtt       120
     tctataccct gtacattagc tctcacgtac tttatttaca ataaagtttc agacactact       180
     agagaggtag tgaatgagtt tagtaggccg tagaaataac cgcaggagaa atggcccaag       240
     gagagcaagg cgcgttagcg cagttcggag aatggttgtg gtccaaccca atcgagccgg       300
     acccaaacga cgaactcgtc gacgcacaag aggaggaggg gcaaatctta tatctggacc       360
     agcaggcagg actgaggtat tcgtattctc agtcaacgac cttaaggcca actcctcagg       420
     gacaatcaag ttcggtcccg acctttcgca atgcccagcg ctttcaggtg gaatactcaa       480
     gtcctaccac cgttacaaga tcacaaacgt caaggttgag tttaagtcac acgcgtccgc       540
     caatacagtc ggcgcaatgt ttgttgaact cgacacttcg tgctcacaat caaccttggg       600
     tagctacatt aactcattca ccatctcaaa atcagcaacc aaaaccttca ccgcccaaca       660
     gattgacggg aaggaattca gggagagcac ggtgaaccaa ttttacatgc tatacaaggc       720
     gaacggtact acgtcggaca ccgccgggca attcatcatc acaatacgcg ttgccaatat       780
     gactcc                                                                  786
//