ID   EF408166; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   EF408166;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-PAV isolate PAV sim10-1 RNA-dependent RNA
DE   polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE   movement protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus PAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
DR   MD5; 9480a04214d6ef139096381abd584b14.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..789
FT                   /organism="Barley yellow dwarf virus PAV"
FT                   /host="Microlaena stipoides"
FT                   /isolate="PAV sim10-1"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Coromandel"
FT                   /note="serogroup: PAV"
FT                   /db_xref="taxon:2169986"
FT   CDS             <1..80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /db_xref="GOA:B6RCD6"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCD6"
FT                   /protein_id="ABR26489.1"
FT                   /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT   CDS             194..>789
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /db_xref="GOA:B6RCD7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCD7"
FT                   /protein_id="ABR26490.1"
FT                   /translation="MNLVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGAEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISKTASKVFRAEAINGKEF
FT                   QESTIDQFWMLYKANGTAADTAGQFIITMSVSLMTA"
FT   CDS             237..698
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCD5"
FT                   /protein_id="ABR26491.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT                   GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQQ
FT                   RPALSLLNSTPRANNQPWLATLIPSQSARPPQRSSEPKRLTGRNSRNQR"
XX
SQ   Sequence 789 BP; 234 A; 193 C; 188 G; 174 T; 0 other;
     agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata ccggaaaacc        60
     actcacaaaa cgaatattaa ttatcaaatc ttggctgggt ttgggatagg gtttatagtt       120
     agtataccct gtacattagc tctcgcgtac tttatttaca ataaagtttc agacaccact       180
     agagaggtgg tgaatgaatt tagtaggccg tagaggacct agacgcgcaa atcaaaatgg       240
     cacaagaagg aggcgccgta gaacagttcg gccagtggtt gtggtccaac ccaatcgagc       300
     aggacccaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaatc ctgtatttag       360
     accaacaggc ggggctgagg tattcgtatt ctcagtcgac aaccttaaag ccaactcttc       420
     cggggcaatc aaattcggcc ccagtctatc gcaatgccca gcgctttcag acggaatact       480
     taagtcctac caccgttaca agatcacaag tatccgtgtt gagtttaagt cacacgcgtc       540
     cgcaacaacg gccggcgcta tctttattga actcgacacc gcgtgcaaac aatcagccct       600
     ggctagctac attaattcct tcacaatcag caagaccgcc tcaaaggtct tcagagccga       660
     agcgattaac gggaaggaat tccaggaatc aacgatagac cagttctgga tgctctacaa       720
     ggccaatgga accgccgctg acacggcagg acaattcatt atcacgatga gtgtcagttt       780
     gatgacggc                                                               789
//