ID EF198240; SV 1; linear; genomic RNA; STD; ENV; 4449 BP. XX AC EF198240; XX DT 16-JUL-2007 (Rel. 92, Created) DT 18-JUL-2007 (Rel. 92, Last updated, Version 2) XX DE Marine RNA virus SOG, complete genome. XX KW ENV. XX OS Marine RNA virus SOG OC Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; OC unclassified ssRNA positive-strand viruses; environmental samples. XX RN [1] RP 1-4449 RX PUBMED; 17617913. RA Culley A.I., Lang A.S., Suttle C.A.; RT "The complete genomes of three viruses assembled from shotgun libraries of RT marine RNA virus communities"; RL Virol J 4:69-69(2007). XX RN [2] RP 1-4449 RA Culley A.I., Lang A.S., Suttle C.A.; RT ; RL Submitted (26-DEC-2006) to the INSDC. RL Botany, University of British Columbia, 3529-6270 University Blvd, RL Vancouver, BC V6T 1Z4, Canada XX DR MD5; 49cbcf6656fee1dc2d32495db9913f21. DR EuropePMC; PMC1948888; 17617913. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Marine RNA virus SOG" FT /environmental_sample FT /mol_type="genomic RNA" FT /country="Canada:British Columbia" FT /isolation_source="Strait of Georgia" FT /collection_date="13-Jul-2004" FT /db_xref="taxon:439014" FT CDS 335..1231 FT /codon_start=1 FT /product="unknown" FT /note="orf1" FT /db_xref="GOA:A7KC97" FT /db_xref="UniProtKB/TrEMBL:A7KC97" FT /protein_id="ABQ50596.1" FT /translation="MAIAWRRTCGSSAMDTSSRISRRDYTPSWWLASSFATAVLVGLTM FT ITSPPCGKTHDSSWIVSWRKVPTHSGIGPGSSGDFYSRSSWVWMQCSPVPSLHQFQPKP FT AIAKLSLSLLLPQTQSRPPRPAKRHQQLLYRQQSLETPSPFQRELGDYFASTDLQGVKT FT GTLLTKSDLSGLRQGGRANIADDTGKTVAWLVNVIRAHAPGFDSMVRDQSKRNENAVTL FT AYWAQQNVGSSKTRHKFCTDHDIDPVGVPMTSQAIAALRLVAATVALVPSAFDQAAVQT FT PTGDMAAAIAAVPAVEK" FT CDS 1385..2863 FT /codon_start=1 FT /product="unknown" FT /note="orf2" FT /db_xref="GOA:A7KC98" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A7KC98" FT /protein_id="ABQ50597.1" FT /translation="MHVPNASVHNLTSAIFLRLFYTDAQGSTPQKPVSGAYSQMHSLRA FT KLVEYLTEQPRQPWTVATFLSRVRPRQRATYTRAAQEFAKIRWTAKAYTWWSRIKAFVK FT AEKTLKSLMLFVPRLISPRSMEFNIALGLYLKPLEKPVYAALNRFVKDDLQFPIPTHVV FT AKGLNAEQTGKVMHAKWSQFSDPVAVGIDAKRFDQHVSVDALEFEHGFYNSIYDCDHLR FT ELLRHQLQTTGVGFLRDGKINYQHNGGRCSGDMNTSLGNILLMCCMCIHLIQLSTRHID FT FINNGDDVVFFCERSSLQTLSDLIREVFPPLGFTIQVEEPVYIFEHIEFCQTHPVFDGW FT RWIMVRNWPDAFYKDCLSVKSLDGKCAHTYYNAIGACGLALAGGIPIYQDFYRHLISIT FT NQHAKQNWNDISLETGMFQLAAGMNRYYREATLAARTSFYMAFNVTPTQQIAIAKAIVK FT NIKIDEMLANPPGDLEALVTRSPTPFCESTHQEL" FT CDS 2903..4231 FT /codon_start=1 FT /product="unknown" FT /note="orf3" FT /db_xref="UniProtKB/TrEMBL:A7KC99" FT /protein_id="ABQ50598.1" FT /translation="MTRKEQIQITSLKKEKTQLEKKLKQTKTKGPKSKRKTVRVTDGGY FT LGFLHGSVPKLPLSYSSDDSFACATYHTRAQFGMSTAAGNNITLVLSPEYSLFNAMALG FT FWEHTTGRESTVINTNLWFDYPAASSNAPLMGTGAVAAPHNIAMQNQVPNTSNSGLEYT FT NGSYKMSFDGLHVTIKQVAVSLKTGFMATITRXHDGGQFLSYDEINNGLQVSSPDAMAA FT TGLPHSTVHVCKSGTLDLRIVPMACNKAVFNNKRFQGDVGGPVPPSSSFLYHVPGAHAT FT GVVIEGEDSNALEPSLMNYSITIAPFDATIAPVFRVTANGLYHAKVFQPTTGSVSLLND FT TPHRALATVSPSNPQIASTQSKVKARNSVKAGEGKPPGVTVEDVVEGGAAGVGGATILG FT KGKDLATTAEEGVASTVEEGLGWIARAGFPALEDAAMLALPMI" XX SQ Sequence 4449 BP; 1111 A; 1196 C; 1103 G; 1038 T; 1 other; tacctgtgat tccttgttgt ctttgacaac taaatattca ctaagagaat gatctcacta 60 gacattctcg aattgggcaa gcgcctcacc atcgcttgtt ccacccgcgc ccttgcactc 120 atcaacgata ggcagagcat cggaagctat cactcattgt ttgacaattg ggtgacgctc 180 ctgatgtttg tgctgcttat caatgttgta gcgcaagtta ccggacgact gcgcctccta 240 ccgggccctc ttcagcaatg gattggctgc ctggctgtta gggttatcgt gttcgatcaa 300 ctgtggaggg tgttccacta cttcctgcct tgcaatggct attgcatggc ggagaacttg 360 tggttcatcg gccatggata cttcttcccg catcagcagg agggattata caccgtcttg 420 gtggctggca tcttcatttg ccaccgctgt actcgttgga ttgacaatga tcacctcacc 480 cccttgtggg aaaacacacg attcatcatg gatcgtgagt tggcgcaaag tgcccacgca 540 ttctgggatt ggccccggaa gcagtggcga cttttactca aggtcgtcat gggtgtggat 600 gcagtgttca ccggttccgt cactgcacca gttccagcca aaaccagcga tagccaagtt 660 gtcgctgagt ctgctcctac cgcagacaca aagccggccg ccaaggccgg caaaacgtca 720 ccagcagctg ttgtatcgcc agcagtccct ggagacgcca agcccgttcc aaagggaact 780 gggtgattac ttcgcctcaa ccgatttgca aggtgtcaaa actggcaccc tgcttacgaa 840 atcggatttg tcggggttac gccagggcgg gcgcgccaac attgcagacg acacaggcaa 900 gaccgttgct tggctcgtga atgtcatccg cgcgcacgct cccgggtttg actcaatggt 960 acgtgaccag tccaaacgaa acgaaaacgc cgttacgcta gcctactggg ctcagcaaaa 1020 cgtcgggtcg tctaaaactc gacacaagtt ttgtacggat cacgacattg accccgtggg 1080 tgtacccatg accagtcagg ccattgcggc cctccggctg gtcgctgcga ccgtagctct 1140 cgttccctca gcgttcgacc aagctgctgt gcagacaccc acaggcgata tggcggcggc 1200 gattgctgct gtgccagccg ttgaaaaata gggctggggc ttgcacgtaa gtgcaggcac 1260 caactgccgg gtaccactcc caaccgtggt gcctgagggc agccaattcc gcgtcaggta 1320 cacgggctta ccagctcggg cgcggcgtgt atatcagata gcgatctccg gctgcggtcg 1380 cttcatgcac gttccaaacg caagtgtcca caacctcact tccgcaatat ttctacgcct 1440 attctacact gatgctcagg gttccacacc tcagaagcct gtgtcgggtg catactcaca 1500 gatgcattcg ctacgagcca aactggtgga gtacctcact gagcaaccac gccaaccgtg 1560 gacagtggca acattcctca gtcgcgtaag gcctcgtcaa cgagcaacct acacgcgcgc 1620 tgcccaggag tttgcaaaga taaggtggac tgccaaggct tacacctggt ggtcacgaat 1680 taaagctttt gtgaaggccg aaaagacact caaatccttg atgttgttcg ttccgcgtct 1740 catctctccg agatccatgg aattcaatat tgcgctagga ctgtatctaa aaccgctgga 1800 aaaaccagta tacgccgctc tcaacagatt tgtcaaggac gatctgcagt tccccatacc 1860 aacacatgtg gttgccaagg gactgaatgc ggaacaaacc ggcaaagtca tgcacgcaaa 1920 atggtcacaa ttttcagatc cagtggccgt gggtatcgat gctaaaaggt ttgatcaaca 1980 cgtaagcgtt gacgcgcttg agtttgaaca tgggttctac aattcaatct atgattgcga 2040 tcacctccgc gagttgctcc gacatcagtt acaaacgact ggtgtggggt tcctccgtga 2100 tggcaagata aattatcagc acaacggtgg gcgttgttct ggcgacatga acacgtcgct 2160 tggcaatatc ctgctcatgt gttgtatgtg tatccatctc atacaactct ccacgaggca 2220 catcgacttc atcaataatg gtgatgacgt tgtgttcttt tgcgaacgtt caagcctaca 2280 aactttgtca gacctcatcc gagaggtgtt tccccccctg gggttcacca ttcaagttga 2340 ggaaccagtg tacatctttg aacacatcga attctgtcaa acacacccag tgtttgatgg 2400 ctggagatgg atcatggtgc gcaattggcc cgacgcattc tacaaggact gcctatcagt 2460 aaaatcattg gatgggaagt gtgctcacac atattacaat gcaattggag catgtgggtt 2520 agcactcgcc gggggtatcc ccatctatca agatttctac agacacctga tatctatcac 2580 gaatcaacac gctaagcaaa attggaacga cattagtcta gagacaggca tgttccagct 2640 tgccgccggc atgaatcgct attaccgcga agctacgctg gctgcgagga ccagttttta 2700 catggctttt aatgtgactc caacacaaca aatcgccatc gccaaagcaa ttgtgaagaa 2760 catcaaaatc gacgagatgt tggcaaaccc ccctggggat ctcgaggctt tagtcacgcg 2820 ttcccctact cctttttgtg aatcaacaca tcaggagctt taatcaccgg cctcaaccaa 2880 accgcgtgtt atcaacaaga agatgactcg aaaagagcaa attcagatta cttccttaaa 2940 gaaggaaaag acacagcttg agaagaagct gaaacaaacc aagactaaag gaccaaagtc 3000 aaaacgtaag acagtgcgtg tgacagatgg tggctatctg ggcttcctac atgggagcgt 3060 acctaagcta cccctatcat acagttccga tgattcgttt gcgtgtgcta cataccacac 3120 gcgtgcgcaa ttcgggatgt caacggcagc aggcaacaac ataacgcttg tcctgtctcc 3180 cgagtactca ctgtttaacg ctatggctct tggcttctgg gaacacacta cgggacgtga 3240 atccacggtg atcaatacga atttgtggtt cgattaccca gccgctagct ccaatgctcc 3300 cctcatgggc actggtgcag tggccgcgcc acataatatc gcaatgcaga accaagtgcc 3360 gaacacatca aactctggct tggaatacac aaatggctct tataagatgt cgtttgatgg 3420 attacatgtg acaattaagc aagttgcggt cagtctcaag actggattca tggccaccat 3480 cacgcgtrtg cacgatggtg ggcagtttct gtcctacgac gagatcaaca acgggcttca 3540 agtgtcatca ccagatgcga tggcggctac aggattgcca cattcgaccg tacatgtctg 3600 caagtcaggg acacttgact tgcggatcgt tccaatggct tgtaataagg ccgtctttaa 3660 caacaagcga ttccaaggag acgtaggcgg acccgttccg ccgtccagtt cgtttttgta 3720 tcacgtgccc ggtgcccatg cgactggtgt cgtcattgaa ggcgaggact caaatgccct 3780 cgagccatct ttgatgaact attccattac catcgcgccg tttgatgcaa ccattgctcc 3840 ggttttccgg gtcacagcaa atggcctata ccacgctaaa gtgtttcagc caacaacagg 3900 cagtgttagc ctactcaacg acacaccaca ccgcgctcta gccacagtct cgccgtccaa 3960 ccctcaaatt gcatcaacgc aatcaaaggt gaaggcacgc aattctgtca aggcaggcga 4020 aggtaagcca ccgggcgtaa cagtagaaga cgtcgtcgaa ggcggcgctg ctggcgtcgg 4080 tggtgccaca atcttaggca agggcaaaga tttggcaacc acggccgagg agggcgtggc 4140 ctcaaccgtt gaggagggat tagggtggat tgcccgagca gggttcccgg cattagagga 4200 tgccgccatg ctcgctctgc ccatgatcta atccgaaaga gtatcagttg gtactaacaa 4260 aaaccagaaa agtcaggagt tcactagctt tcgcattggt tggttaccat tcaccattaa 4320 aacttaggta gtcgcccact ccaccaacag tccacatttt gattgttagg tgggttactg 4380 gaccgccccc tgcacgacac cgaggtgtac gacaggtaag gtagtcagtg ctttagtgca 4440 caacaggag 4449 //