ID   EF057791; SV 1; linear; genomic DNA; STD; VRL; 1793 BP.
XX
AC   EF057791;
XX
DT   29-OCT-2006 (Rel. 89, Created)
DT   29-OCT-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Cotton leaf curl Rajasthan virus isolate Sri precoat protein (AV2), coat
DE   protein (AV1), replication enhancer protein (AC3), and transcription
DE   activator protein (AC2) genes, complete cds.
XX
KW   .
XX
OS   Cotton leaf curl Rajasthan virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1793
RA   Padmalatha K.V., Malathi V.G.;
RT   "Cotton leaf curl disease is transmitted by whiteflies";
RL   Unpublished.
XX
RN   [2]
RP   1-1793
RA   Padmalatha K.V., Malathi V.G.;
RT   ;
RL   Submitted (11-OCT-2006) to the INSDC.
RL   Advanced Centre for Plant Virology, Indian Agricultural Research Institute,
RL   Pusa Road, New Delhi, Delhi 110012, India
XX
DR   MD5; d5f54544b82a9fd55a13d6b26bb64eb4.
DR   EuropePMC; PMC3416813; 22900008.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1793
FT                   /organism="Cotton leaf curl Rajasthan virus"
FT                   /isolate="Sri"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Rajasthan, Sri Ganganagar, Sri Ganganagar
FT                   Research Station"
FT                   /note="CLCuRV-Sri"
FT                   /db_xref="taxon:223259"
FT   gene            132..488
FT                   /gene="AV2"
FT   CDS             132..488
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="precoat protein"
FT                   /db_xref="GOA:A0FLL5"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:A0FLL5"
FT                   /protein_id="ABJ99987.1"
FT                   /translation="MWDPLLNEFPDTVHEFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT                   ICILRSRSYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   EAQDVQDVQKSRCS"
FT   gene            292..1062
FT                   /gene="AV1"
FT   CDS             292..1062
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:A0FLL6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:A0FLL6"
FT                   /protein_id="ABJ99988.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(1065..1469)
FT                   /gene="AC3"
FT   CDS             complement(1065..1469)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:A0FLL7"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:A0FLL7"
FT                   /protein_id="ABJ99990.1"
FT                   /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT                   LTIRIQFNYNTRRALGLHKCFLTFRIWTTLQPQTGLFLRVFKNQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSEIKFKLY"
FT   gene            complement(1162..1614)
FT                   /gene="AC2"
FT   CDS             complement(1162..1614)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:A0FLL8"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:A0FLL8"
FT                   /protein_id="ABJ99989.1"
FT                   /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH
FT                   AESSGTAQVFSNLSNLDDLTASDWSFLKGIQKPSPQISEQSRCNFN"
XX
SQ   Sequence 1793 BP; 501 A; 348 C; 402 G; 542 T; 0 other;
     accggatggc cgcgcgattt ttttggtggg ccttaccatt aacacttgtc ggccaatcat        60
     atgactccct caaagctaaa taacgctccc gcacactata agtacttgcg cactaagttt       120
     caaattcaaa catgtgggat ccactattaa acgaattccc tgatacggtt cacgagtttc       180
     ggtgtatgct ttctgtgaaa tatttgcaac ttttgtcgca ggattattca ccggatacgc       240
     ttgggtacga gttaatacgg gatttaattt gtattttacg ctcccgtagt tatgtcgaag       300
     cgagctgccg atatcgtcat ttctacgccc gcgtcgaaag tacgccggcg tctgaacttc       360
     ggcagcccat acaccagccg tgctgctgcc cccattgtcc gcgtcacaaa acaacaggca       420
     tggacaaaca ggcctatgaa caggaagccc aggatgtaca ggatgtacag aagtccagat       480
     gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt       540
     cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat       600
     agagttggta agagattttg tgtcaagtct gtttatgtgt tgggtaagat atggatggat       660
     gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt       720
     agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc       780
     agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat       840
     gcaactgtca ccggtggaca atacgcttca aaggaacagg ctttggtcaa gaagtttgtc       900
     agagttaaca attatgttgt ttacaatcaa caggaagcag gaaaatacga gaatcatacg       960
     gaaaatgcgt taatgcttta tatggcttgt actcacgcta gcaaccctgt ttatgctacg      1020
     ttgaagatta ggatatattt ttatgactct gtaacgaatt gatattaata aagtttaaat      1080
     tttatttctg aatattgatc tacatacata gtttgttgga ttacattgta caatacatgt      1140
     tctacagctt taataactaa attaattgaa attacaccga gattgttcag atatttgagg      1200
     acttggtttt tgaataccct taagaaaaga ccagtctgag gctgtaaggt cgtccagatt      1260
     cgaaaggtta gaaaacactt gtgcagtccc agagctctcc gcgtgttgta gttgaactgg      1320
     atcctgatcg tgagtatgtc catattcgtc gtgaatggac ggttgacgtg gctgatgatc      1380
     ttgaaataaa ggggatttgg aacctcccag atatatgcgc cattccctgc ttgagctgca      1440
     gtgatgggtt cccctgtgcg tgaatccatg gttgtggcag ttgattgaca gataataaga      1500
     acacccgcat tcaagatcta ctctcctcct cctgttgcgc ctcttcgctt ccctgtgctg      1560
     tactttgatt ggtacctgag tacatgggtc tatcaagtgt gatgaagatc gcattcttta      1620
     aagcccaatt ttttagtgca gaattcttct cttcatccaa ttgaccgctc ttgcaactct      1680
     ccccggtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaaa      1740
     actttaattt gaaattcaaa ccaaaaggct aaagcggcca tccgtataat att             1793
//